View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1983_low_8 (Length: 367)

Name: NF1983_low_8
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1983_low_8
NF1983_low_8
[»] chr2 (19 HSPs)
chr2 (175-354)||(4313303-4313482)
chr2 (17-176)||(36750430-36750592)
chr2 (17-179)||(28682924-28683089)
chr2 (17-170)||(35090637-35090793)
chr2 (17-169)||(35084665-35084820)
chr2 (17-176)||(13462056-13462218)
chr2 (17-175)||(44716787-44716949)
chr2 (17-175)||(13456115-13456276)
chr2 (16-175)||(31002391-31002554)
chr2 (16-175)||(31008369-31008532)
chr2 (15-170)||(13149674-13149831)
chr2 (17-177)||(30965343-30965507)
chr2 (20-176)||(11048535-11048694)
chr2 (20-175)||(23343579-23343737)
chr2 (54-175)||(35438693-35438816)
chr2 (183-354)||(4255010-4255181)
chr2 (183-286)||(4247893-4247996)
chr2 (49-175)||(29833255-29833384)
chr2 (61-100)||(31651664-31651703)
[»] scaffold0363 (1 HSPs)
scaffold0363 (17-175)||(605-763)
[»] chr8 (21 HSPs)
chr8 (17-175)||(14417956-14418114)
chr8 (17-175)||(9935294-9935455)
chr8 (17-175)||(32890904-32891065)
chr8 (17-175)||(32897028-32897189)
chr8 (17-175)||(7771247-7771408)
chr8 (17-175)||(14799399-14799559)
chr8 (18-175)||(5542143-5542303)
chr8 (18-172)||(42992989-42993146)
chr8 (17-175)||(36818987-36819147)
chr8 (17-175)||(1882734-1882897)
chr8 (17-168)||(22219706-22219861)
chr8 (17-175)||(39735531-39735696)
chr8 (17-175)||(10705853-10706020)
chr8 (17-175)||(39727300-39727455)
chr8 (21-100)||(10700049-10700127)
chr8 (70-175)||(24250171-24250278)
chr8 (102-177)||(42033856-42033932)
chr8 (125-176)||(39689788-39689839)
chr8 (93-170)||(1171414-1171493)
chr8 (79-148)||(31399047-31399119)
chr8 (52-124)||(17954557-17954629)
[»] chr4 (27 HSPs)
chr4 (16-177)||(48167193-48167353)
chr4 (16-175)||(48160974-48161132)
chr4 (17-176)||(10733228-10733390)
chr4 (17-176)||(10946997-10947159)
chr4 (17-175)||(33458249-33458411)
chr4 (17-175)||(10739322-10739483)
chr4 (17-175)||(10953091-10953252)
chr4 (17-175)||(24288002-24288161)
chr4 (17-175)||(26963324-26963483)
chr4 (17-175)||(6257188-6257349)
chr4 (17-176)||(50168609-50168770)
chr4 (13-175)||(49976601-49976763)
chr4 (61-175)||(26956812-26956929)
chr4 (21-120)||(33461434-33461532)
chr4 (20-142)||(3769586-3769710)
chr4 (84-175)||(4632869-4632963)
chr4 (18-115)||(44831658-44831755)
chr4 (20-145)||(19686341-19686469)
chr4 (73-170)||(55473133-55473230)
chr4 (17-128)||(50427383-50427501)
chr4 (20-93)||(4632410-4632482)
chr4 (41-124)||(9237402-9237485)
chr4 (88-170)||(34308060-34308144)
chr4 (35-91)||(50155990-50156046)
chr4 (49-124)||(35177806-35177881)
chr4 (44-110)||(28704553-28704619)
chr4 (50-114)||(33045264-33045328)
[»] chr7 (18 HSPs)
chr7 (17-175)||(3817294-3817455)
chr7 (17-175)||(3811152-3811313)
chr7 (17-175)||(339386-339547)
chr7 (17-175)||(351801-351962)
chr7 (17-175)||(20238966-20239127)
chr7 (17-176)||(28420941-28421103)
chr7 (21-175)||(42767277-42767435)
chr7 (17-175)||(12804015-12804176)
chr7 (17-176)||(35147985-35148149)
chr7 (17-175)||(5849540-5849702)
chr7 (17-176)||(5979155-5979318)
chr7 (17-160)||(43540000-43540146)
chr7 (18-175)||(26383642-26383806)
chr7 (17-175)||(22741901-22742067)
chr7 (21-124)||(30219283-30219386)
chr7 (177-286)||(34801436-34801545)
chr7 (34-110)||(18666547-18666622)
chr7 (69-170)||(26381136-26381239)
[»] chr6 (21 HSPs)
chr6 (17-175)||(32035269-32035430)
chr6 (17-176)||(4580303-4580465)
chr6 (17-175)||(8650786-8650947)
chr6 (17-179)||(21190845-21191010)
chr6 (20-175)||(8662764-8662922)
chr6 (21-175)||(21782736-21782893)
chr6 (17-176)||(25354227-25354389)
chr6 (21-175)||(31756196-31756355)
chr6 (17-175)||(21197004-21197163)
chr6 (17-175)||(18778598-18778760)
chr6 (18-120)||(25343641-25343742)
chr6 (16-120)||(21783350-21783452)
chr6 (16-120)||(21789573-21789675)
chr6 (49-170)||(17581673-17581797)
chr6 (16-169)||(21770546-21770701)
chr6 (20-175)||(6097999-6098158)
chr6 (34-124)||(34603368-34603457)
chr6 (34-124)||(34724645-34724734)
chr6 (72-174)||(6102693-6102803)
chr6 (18-82)||(1106229-1106294)
chr6 (15-124)||(17900176-17900284)
[»] chr3 (26 HSPs)
chr3 (17-175)||(17055775-17055937)
chr3 (17-175)||(10244317-10244478)
chr3 (17-175)||(11839708-11839869)
chr3 (17-177)||(49157694-49157857)
chr3 (17-176)||(10760632-10760794)
chr3 (17-176)||(30051084-30051246)
chr3 (17-175)||(10238195-10238356)
chr3 (17-175)||(49151627-49151788)
chr3 (17-175)||(11846046-11846207)
chr3 (17-175)||(8331802-8331963)
chr3 (17-175)||(10766854-10767015)
chr3 (21-172)||(55003398-55003552)
chr3 (17-175)||(42191203-42191364)
chr3 (17-175)||(42197145-42197306)
chr3 (44-175)||(28964910-28965042)
chr3 (17-175)||(38449048-38449207)
chr3 (17-175)||(38455535-38455694)
chr3 (15-175)||(48128030-48128194)
chr3 (17-169)||(53069043-53069199)
chr3 (17-171)||(17593268-17593426)
chr3 (16-114)||(34300511-34300609)
chr3 (18-177)||(13445077-13445229)
chr3 (16-177)||(46656698-46656863)
chr3 (16-112)||(12108716-12108812)
chr3 (78-175)||(24643534-24643635)
chr3 (175-233)||(6058847-6058905)
[»] chr1 (14 HSPs)
chr1 (16-171)||(34740000-34740158)
chr1 (17-175)||(25387487-25387648)
chr1 (17-175)||(25381518-25381679)
chr1 (17-175)||(50306205-50306365)
chr1 (17-175)||(1078239-1078400)
chr1 (17-175)||(44410027-44410186)
chr1 (11-175)||(24963685-24963852)
chr1 (20-175)||(31058063-31058220)
chr1 (11-175)||(24926738-24926904)
chr1 (16-176)||(12183561-12183728)
chr1 (17-168)||(31051560-31051718)
chr1 (17-120)||(8092887-8092990)
chr1 (57-176)||(27955216-27955337)
chr1 (16-161)||(38151973-38152114)
[»] scaffold0236 (1 HSPs)
scaffold0236 (17-175)||(5550-5711)
[»] chr5 (25 HSPs)
chr5 (17-175)||(28525369-28525530)
chr5 (17-175)||(28531465-28531626)
chr5 (17-175)||(12686162-12686323)
chr5 (17-175)||(12692264-12692425)
chr5 (17-176)||(7389530-7389691)
chr5 (17-177)||(41297292-41297455)
chr5 (17-166)||(24054349-24054502)
chr5 (16-175)||(32094142-32094304)
chr5 (16-175)||(32096943-32097105)
chr5 (17-175)||(30384359-30384521)
chr5 (26-175)||(16215157-16215309)
chr5 (19-174)||(19066091-19066249)
chr5 (17-175)||(19059747-19059908)
chr5 (17-175)||(30772298-30772460)
chr5 (175-354)||(41934450-41934626)
chr5 (37-169)||(14610184-14610321)
chr5 (21-165)||(26509871-26510013)
chr5 (33-100)||(28542269-28542336)
chr5 (17-95)||(20500153-20500231)
chr5 (31-168)||(26316782-26316922)
chr5 (36-123)||(37896336-37896423)
chr5 (125-169)||(8706454-8706498)
chr5 (16-51)||(8706532-8706567)
chr5 (18-114)||(33848933-33849030)
chr5 (63-119)||(33753294-33753350)
[»] scaffold0440 (1 HSPs)
scaffold0440 (17-175)||(1176-1338)
[»] scaffold0012 (1 HSPs)
scaffold0012 (20-175)||(172873-173031)
[»] scaffold0208 (2 HSPs)
scaffold0208 (17-175)||(6538-6699)
scaffold0208 (21-175)||(12415-12572)
[»] scaffold1114 (1 HSPs)
scaffold1114 (21-177)||(1107-1263)
[»] scaffold0085 (1 HSPs)
scaffold0085 (17-177)||(38445-38606)
[»] scaffold0185 (1 HSPs)
scaffold0185 (23-120)||(5945-6041)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 175 - 354
Target Start/End: Complemental strand, 4313482 - 4313303
Alignment:
Q  175 attgggagcactttcaaatcttcatggatcactatccattacaaaattagagaatgttacaaacaactttgaagcctcggaggcaaagataatggataag 274  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  4313482 attgggagcactttcaaatcttcatggatcactatccattacgaaattagagaatattacaaacaactttgaagcctcagaggcaaagataatggataag 4313383  T
Q  275 aagtaccttgagagattattattgtcatggtctcaagatgtaaaggatcattttacagattcgcaaagtgagatggatat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4313382 aagtaccttgagagattattattgtcatggtctcaagatgtaaatgatcattttacagattcgcaaagtgagatggatat 4313303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 36750430 - 36750592
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36750430 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 36750529  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  36750530 gattcataattgttgaacatgttttatgaaatctgtttttattaagacttaaatttccaacat 36750592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 28683089 - 28682924
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28683089 caggtattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 28682990  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacattgg 179  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  28682989 gattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttccaacattgg 28682924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 35090793 - 35090637
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35090793 caggtattcctaatacactaattgttaatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 35090694  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttc 170  Q
    ||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||    
T  35090693 gattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttc 35090637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 35084820 - 35084665
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  35084820 caggtattcctaatacactaattgttaatattcttgataaatcaaacatgtcgtagatccgatcataatcattttcaatgttttgtttgcttccgctatt 35084721  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaattt 169  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||||||||||||    
T  35084720 gattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaattt 35084665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 13462056 - 13462218
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13462056 caggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctatt 13462155  T
Q  117 gattc---atagttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    |||||   || ||||||||| | ||||||||||| ||| |||||||||||| |||||||||||    
T  13462156 gattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaacat 13462218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 44716949 - 44716787
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgtttt-gtttgcttccgctat 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  44716949 caggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttcttttgcttccgctat 44716850  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||| |||   ||||||||| |||||||| ||||||||||||||||||||||||||| ||||    
T  44716849 tgattgataaccgttgaacatgttttatgatatctgtttttattaagacctaaatttctaaca 44716787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 13456115 - 13456276
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13456115 caggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctatt 13456214  T
Q  117 gattc---atagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||   || ||||||||| | ||||||||||| ||| |||||||||||| ||||||||||    
T  13456215 gattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaaca 13456276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 31002391 - 31002554
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31002391 tcaggtattcctaataccctaattcttgatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctat 31002490  T
Q  116 tgatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    |||||    || ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  31002491 tgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaaca 31002554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 31008369 - 31008532
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31008369 tcaggtattcctaataccctaattcttgatattcttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctat 31008468  T
Q  116 tgatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    |||||    || ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  31008469 tgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaaca 31008532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 13149831 - 13149674
Alignment:
Q  15 atcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 114  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13149831 atcaggtattcttaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 13149733  T
Q  115 ttgatt---catagttgaacatattttatgaaatctgtttttattaagacctaaatttc 170  Q
    ||||||    || ||||||||| | ||||||||||||||| ||||||||||||||||||    
T  13149732 ttgatttacgattgttgaacatgtattatgaaatctgtttatattaagacctaaatttc 13149674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 30965343 - 30965507
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30965343 caggtattcctaataccctaattcttaaaataattgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctatt 30965442  T
Q  117 gat---tcatagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaacatt 177  Q
    |||   | || ||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||    
T  30965443 gatttatgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttctaacatt 30965507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 11048694 - 11048535
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    ||||||||| | ||||||||||||||||||||| || |||||||||| |||| |||| |||||||||||||||||||||||||||||||| |||||||||    
T  11048694 gtattcctagtgccctaattcttaatatccttggtacatcaaacatgacgtatatccaatcataatcatgttcaatgttttgtttgcttcagctattgat 11048595  T
Q  120 tcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    |||||   |||| |||| ||||||||||| | |||||| |||||||||||||||||||||    
T  11048594 tcataattgttggacatgttttatgaaatttatttttaataagacctaaatttccaacat 11048535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 23343579 - 23343737
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| |||||    
T  23343579 gtattcctaataccccaactcttaatatccttgataaatcaaacatgtcgtagattcgttcatattcatgttcaatgttttgtttgcttccgctgttgat 23343678  T
Q  120 tc---atagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||   || ||||||||| ||||||||||||| || |||| |||| ||||||||| ||||    
T  23343679 tcgtaatcgttgaacatgttttatgaaatctcttcttatcaagatctaaatttcaaaca 23343737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 54 - 175
Target Start/End: Complemental strand, 35438816 - 35438693
Alignment:
Q  54 taaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtt 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||   ||||||||| ||||||||||| || |    
T  35438816 taaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctattgattcataactgttgaacatgttttatgaaatttg-t 35438718  T
Q  151 tttattaagacctaaatttccaaca 175  Q
    ||||||||| |||||||||||||||    
T  35438717 tttattaaggcctaaatttccaaca 35438693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 183 - 354
Target Start/End: Original strand, 4255010 - 4255181
Alignment:
Q  183 cactttcaaatcttcatggatcactatccattacaaaattagagaatgttacaaacaactttgaagcctcggaggcaaagataatggataagaagtacct 282  Q
    |||||||||||||||| |||||||| | |||||  ||||||||||||||||  |||  ||||||||| || ||||||||||||||||||||| |||||||    
T  4255010 cactttcaaatcttcacggatcacttttcattaagaaattagagaatgttaacaacggctttgaagcatcagaggcaaagataatggataaggagtacct 4255109  T
Q  283 tga-gagattattattgtcatggtctcaagatgtaaaggatcattttacagattcgcaaagtgagatggatat 354  Q
    ||| ||| ||||  || | ||||||||| |||| |||||| ||||||||| |||| |||||||| ||||||||    
T  4255110 tgatgag-ttatggtttttatggtctcaggatgcaaaggaccattttacaaattcacaaagtgaaatggatat 4255181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 183 - 286
Target Start/End: Original strand, 4247893 - 4247996
Alignment:
Q  183 cactttcaaatcttcatggatcactatccattacaaaattagagaatgttacaaacaactttgaagcctcggaggcaaagataatggataagaagtacct 282  Q
    |||||| ||||||||| |||||||| |||||||  |||||||||||| |||| |||| ||||||||| |||||||||||||| ||||||||||| |||||    
T  4247893 cactttgaaatcttcacggatcactttccattaggaaattagagaatattaccaacagctttgaagcatcggaggcaaagatgatggataagaaatacct 4247992  T
Q  283 tgag 286  Q
    ||||    
T  4247993 tgag 4247996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 29833255 - 29833384
Alignment:
Q  49 cttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattc---atagttgaacatattttatgaaat 145  Q
    ||||||||||||||||||| || |||||||||||||| ||||||||| |||| |||| ||||| |||||||||   ||  || ||||| | |||||||||    
T  29833255 cttgataaatcaaacatgttgtcgatccgatcataattatgttcaatattttatttgtttccgttattgattcacaattattaaacatgtattatgaaat 29833354  T
Q  146 ctgtttttattaagacctaaatttccaaca 175  Q
    || ||| |||| | ||||||||||| ||||    
T  29833355 ctctttatatttatacctaaatttctaaca 29833384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 100
Target Start/End: Original strand, 31651664 - 31651703
Alignment:
Q  61 aacatgtcgtagatccgatcataatcatgttcaatgtttt 100  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  31651664 aacatgtcataaatccgatcataatcatgttcaatgtttt 31651703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 763 - 605
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 664  T
Q  117 gattcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  663 gattcatagttaaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 14417956 - 14418114
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14417956 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 14418055  T
Q  117 gattcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  14418056 gattcatagttaaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 14418114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 9935294 - 9935455
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9935294 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatattcaatgttttgtttgcttccgctatt 9935393  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9935394 gattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 9935455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 32890904 - 32891065
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32890904 caggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 32891003  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  32891004 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 32891065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 32897028 - 32897189
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32897028 caggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 32897127  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  32897128 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 32897189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 7771247 - 7771408
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7771247 caggtattcttaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 7771346  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  7771347 gatttataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 7771408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 14799559 - 14799399
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14799559 caggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 14799461  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||| ||||| |||||||||||||||||||||||    
T  14799460 gattcataattgttgaacatgtattatgaaatttgtttatattaagacctaaatttccaaca 14799399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 5542303 - 5542143
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5542303 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 5542204  T
Q  118 attcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||||   ||||||||| | |||| |||||| ||| |||||| ||||||||||||||||    
T  5542203 attcataattgttgaacatgtattataaaatctatttatattaaaacctaaatttccaaca 5542143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 42993146 - 42992989
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42993146 aggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 42993048  T
Q  118 attcata---gttgaacatattttatgaaatctgttttt-attaagacctaaatttcca 172  Q
    |||||||   ||||||||| | ||||||||||||||||| |||||||||||||||||||    
T  42993047 attcataattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttcca 42992989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 36818987 - 36819147
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  36818987 caggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatattcaatgttttgtttgcttccactatt 36819085  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | |||||| || ||||| |||||||||||||||||||||||    
T  36819086 gattcataattgttgaacatgtattatgagatttgtttatattaagacctaaatttccaaca 36819147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 1882897 - 1882734
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtc-gtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||| |||||||||||||||||||||||||||||||    
T  1882897 caggtattcctaataccctaattcttaacatccttgataaatcaaacatgtcattagatccgttcatattcatgttcaatgttttgtttgcttccgctat 1882798  T
Q  116 tgattc---atagttgaacatattttatgaaatctgtttt-tattaagacctaaatttccaaca 175  Q
    ||||||   || ||||||||| || ||||||||||||||| |||||||||||||||||||||||    
T  1882797 tgattcttaattgttgaacatgttctatgaaatctgttttatattaagacctaaatttccaaca 1882734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 22219861 - 22219706
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgtttt-gtttgcttccgctat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| |||| |||||    
T  22219861 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaaagttttctttttcttctgctat 22219762  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatt 168  Q
    |||||||||    |||||||| ||||||||||||| ||||||||||||||||||||    
T  22219761 tgattcataactattgaacatgttttatgaaatctctttttattaagacctaaatt 22219706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 39735696 - 39735531
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||    
T  39735696 caggtattccttataccctagttcttaatatctttgataaatcaaacatgtcgtagatacaatcataatcatgttcaatattttatttacttccgctatt 39735597  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttatt----aagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||| ||||||||    || ||||||||||||||||    
T  39735596 gattcataattgttgaacatgttttatgaaatctatttttattattaaaaacctaaatttccaaca 39735531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 10705853 - 10706020
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccg------atcataatcatgttcaatgttttgtttgcttcc 110  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||| |    
T  10705853 caggtaatcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcataatcatgttcaatgttttgtttgcttac 10705951  T
Q  111 gctattgatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    ||||||||||    || ||| ||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  10705952 gctattgatttacgattgttaaacatgtattatgaaatctgtttttaattaagacctaaatttccaaca 10706020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 39727455 - 39727300
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||| ||||    
T  39727455 caggtatttcttataccctaattcttaatatccttgataaatcaaacatgt---------gatcataatcatgttcaatgttttgtttgcttccgttatt 39727365  T
Q  117 gattcata---gttgaacatattttatgaaatctgttt---ttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||| |||   ||||||||||||||||||||||||    
T  39727364 gattcataattgttgaacatgttttatgaaatctatttttattattaagacctaaatttccaaca 39727300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 10700049 - 10700127
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgtttt 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10700049 tattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgtttt 10700127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 24250171 - 24250278
Alignment:
Q  70 tagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaa 166  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||   ||| ||||| ||||||||||| ||||||| ||||||||||||    
T  24250171 tagatccgatcataataatgttcaatattttgtttgtttccgctattgattcatatttgttcaacatgttttatgaaatatgttttt-ttaagacctaaa 24250269  T
Q  167 tttccaaca 175  Q
    ||| |||||    
T  24250270 ttttcaaca 24250278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 42033856 - 42033932
Alignment:
Q  102 tttgcttccgctattgattcatagttgaaca-tattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    |||||||| ||||||||||||| ||||   | | ||||||||||||| |||||| ||||||||||||||||||||||    
T  42033856 tttgcttctgctattgattcattgttgttgaatgttttatgaaatctatttttagtaagacctaaatttccaacatt 42033932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 39689788 - 39689839
Alignment:
Q  125 gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||| |||||||||||||||||||||||| |||||| | ||||||||    
T  39689788 gttgaacatgttttatgaaatctgtttttattaaaacctaagtctccaacat 39689839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 1171414 - 1171493
Alignment:
Q  93 aatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttc 170  Q
    ||||||||||||||||||||  |||| |||||   |||||| || ||| |||||||||||||| |||||||||||||||||    
T  1171414 aatgttttgtttgcttccgcggttgaatcataattgttgaatatgtttcatgaaatctgtttt-attaagacctaaatttc 1171493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 31399119 - 31399047
Alignment:
Q  79 tcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctg 148  Q
    ||||||||||||||||||| |||||||| ||| |||||||||||||    |||||||||| |||| |||||||    
T  31399119 tcataatcatgttcaatgtattgtttgcctccactattgattcataattattgaacatatgttattaaatctg 31399047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 17954557 - 17954629
Alignment:
Q  52 gataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata 124  Q
    |||| ||||||||||| || ||||| |||||| ||||||| |||||| | |||||||||| || |||||||||    
T  17954557 gatagatcaaacatgttgtggatccaatcatattcatgtttaatgttgtttttgcttccgttaatgattcata 17954629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 48167193 - 48167353
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48167193 tcaggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataattatgttcaatgttttgtttgcttccgctat 48167291  T
Q  116 tgattcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  48167292 tgattcatagttgaacatattttatgaaatctatttttattaagacctaaatttctaacatt 48167353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 48160974 - 48161132
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  48160974 tcaggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataattatgttcaatgttttgtttgcttccgctat 48161072  T
Q  116 tgattcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  48161073 tgattcatagttgaacatattttatgaaatctatttttattaagacctaaatttctaaca 48161132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 10733390 - 10733228
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10733390 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctatt 10733291  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||||| ||||||||||||||||| | |||||| |||||| ||||||||    
T  10733290 gattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaacat 10733228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 10947159 - 10946997
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10947159 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctatt 10947060  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||||| ||||||||||||||||| | |||||| |||||| ||||||||    
T  10947059 gattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaacat 10946997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 33458411 - 33458249
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33458411 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctatt 33458312  T
Q  117 gatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    ||||    || ||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  33458311 gatttacgattgttgaacatatattatgaaatctgtttttaattaagacctaaatttccaaca 33458249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 10739483 - 10739322
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10739483 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctatt 10739384  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| | |||||| |||||| |||||||    
T  10739383 gattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaaca 10739322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 10953252 - 10953091
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10953252 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctatt 10953153  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| | |||||| |||||| |||||||    
T  10953152 gattcataattgttgaacatgttttatgaaatctgtttatgttaagagctaaatgtccaaca 10953091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 24288002 - 24288161
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24288002 caggtattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatacgatcataatcatgttcaatgttttgtttgcttccgctatt 24288101  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||  | |||||||||||||||||||||||||    
T  24288102 gattcataattgttgaacatgttttatgaaatc--tatttattaagacctaaatttccaaca 24288161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 26963483 - 26963324
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  26963483 caggtattcctaatac--taattcttgatatccttgataaatcaaacatgtcgtagatccgttcatacttatgttcaatgttttgtttgcttccgctatt 26963386  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  26963385 gattcataatcgttgaacatgttttatgaaatttgtttttattaagacctaaatttccaaca 26963324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 6257349 - 6257188
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6257349 caggtattcctaatatcctaattcttaacatccttgataaatcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctgtt 6257250  T
Q  117 gat---tcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||   | || ||||||||| | ||||||||||| ||| |||||||||||||||||||||||    
T  6257249 gatttatgattgttgaacatgtattatgaaatctatttatattaagacctaaatttccaaca 6257188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 50168609 - 50168770
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  50168609 caggtattccttatacc-taattgttaatattcttgataaatcaaacatgtcgtatattcgatcataatcatgttcaatgttttgtttgcttccgctatt 50168707  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||| | ||||||| |||||| |||||||||||||||||||||||||||    
T  50168708 gattcataattgttgaacgtgttttatgtaatctggttttattaagacctaaatttccaacat 50168770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 49976601 - 49976763
Alignment:
Q  13 tcatcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgc 112  Q
    ||||| |||||||||||||| |||||| |||   |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  49976601 tcatctggtattcctaatactctaattatta---tccttgataaatcaaacatgtcgtagatccgatcataatcatattcaatgttttgtttgctttcgc 49976697  T
Q  113 tattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||| ||||||||   |||||| || ||||||||||| |||||||||||| | ||||||||| ||||    
T  49976698 tatcgattcataattgttgaatatgttttatgaaatttgtttttattaaaatctaaatttctaaca 49976763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 26956929 - 26956812
Alignment:
Q  61 aacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtttttatta 157  Q
    ||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||    
T  26956929 aacatgtcgtagatccgttcatacttatgttcaatgttttatttgcttccgctattgattcataatcgttgaacatgttttatgaaatctgtttttatta 26956830  T
Q  158 agacctaaatttccaaca 175  Q
    ||||||||||||||||||    
T  26956829 agacctaaatttccaaca 26956812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 33461532 - 33461434
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  33461532 tattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtaaatccgaccataatcatgttcaatgttttgtttgcttccactattgatt 33461434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 3769586 - 3769710
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    |||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  3769586 gtattcctaatacc-taattattaatatccttgattaatgaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttaaattattgat 3769684  T
Q  120 tcata---gttgaacatattttatga 142  Q
    |||||    |||||||||||||||||    
T  3769685 tcataattattgaacatattttatga 3769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 4632869 - 4632963
Alignment:
Q  84 atcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||||||||||||||||||||||||||| |||||| |||   ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4632869 atcatgttcaatgttttgtttgcttccgctgttgattaataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 4632963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 44831755 - 44831658
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||  ||||||||||||||    
T  44831755 aggtattcttaataccctagttcttaatatccttgataaattaaacatgtcgtagattcgatcatattcatgttcaatgattaatttgcttccgctat 44831658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 19686469 - 19686341
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    |||||| |||||||| |||||||||||| |||||| |||||| ||||| ||||||||||| ||||| | ||||||| ||||||||||||||| |||||||    
T  19686469 gtattcataatacccgaattcttaatatgcttgattaatcaagcatgttgtagatccgatgataattacgttcaatattttgtttgcttccgttattgat 19686370  T
Q  120 tcatag---ttgaacatattttatgaaat 145  Q
    | ||||   |||||||| |||||||||||    
T  19686369 ttatagttattgaacatgttttatgaaat 19686341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 55473230 - 55473133
Alignment:
Q  73 atccgatcataatcatgttcaatgttttgtttgcttccgctattgattcatagttgaacatattttatgaaatctgtttttattaagacctaaatttc 170  Q
    |||| ||||||||||| |||||| |||| ||||||||||||||||||| ||  |||||||||||||||||||| ||||| ||||||||||||||||||    
T  55473230 atccaatcataatcatattcaatattttatttgcttccgctattgatttattattgaacatattttatgaaatttgtttctattaagacctaaatttc 55473133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 50427383 - 50427501
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaa--------acatgtcgtagatccgatcataatcatgttcaatgttttgtttgctt 108  Q
    ||||||||||||||||||||||||||||| | |||||||||||||        |||||||||| |||||||||||||||| |||||||||||| ||||||    
T  50427383 caggtattcctaataccctaattcttaatcttcttgataaatcaataaattaaacatgtcgtacatccgatcataatcat-ttcaatgttttgattgctt 50427481  T
Q  109 ccgctattgattcatagttg 128  Q
    || ||||| |||||||||||    
T  50427482 ccactattaattcatagttg 50427501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 4632410 - 4632482
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttca 93  Q
    ||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4632410 gtatttctgataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttca 4632482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 124
Target Start/End: Original strand, 9237402 - 9237485
Alignment:
Q  41 ttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata 124  Q
    ||||||| ||||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||  ||||| |||||||    
T  9237402 ttaatatacttgataaatcaaacatgtcgtaaatccgagcataatcatattcaatgttctgtttgcttcgactattcattcata 9237485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 34308144 - 34308060
Alignment:
Q  88 tgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttc 170  Q
    |||||||| |||||| |||||||||||||||||||||    |||||||| |||||| ||||||| |||||||||||| ||||||||    
T  34308144 tgttcaatattttgtatgcttccgctattgattcataattattgaacatgttttataaaatctg-ttttattaagacgtaaatttc 34308060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 50155990 - 50156046
Alignment:
Q  35 taattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgtt 91  Q
    ||||| ||||||| ||||||||||||||||||||||| |||||||| |||| |||||    
T  50155990 taattgttaatattcttgataaatcaaacatgtcgtatatccgatcttaattatgtt 50156046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 35177806 - 35177881
Alignment:
Q  49 cttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata 124  Q
    ||||||||||| || |||| ||| ||||||| |||||||| || ||||||||||||  ||| |||||| |||||||    
T  35177806 cttgataaatctaatatgttgtatatccgattataatcatatttaatgttttgtttttttcagctattaattcata 35177881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Original strand, 28704553 - 28704619
Alignment:
Q  44 atatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttcc 110  Q
    ||||| |||||| ||||||||||| ||||||| ||||||| ||||| ||||| |||| |||| ||||    
T  28704553 atatctttgatacatcaaacatgttgtagatctgatcatattcatgctcaatattttatttgtttcc 28704619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 33045264 - 33045328
Alignment:
Q  50 ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 114  Q
    |||||| |||||||| || ||||||||||| ||||||||||| | | |||| |||||||| ||||    
T  33045264 ttgatagatcaaacaagttgtagatccgattataatcatgtttagttttttatttgcttctgcta 33045328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 3817455 - 3817294
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817455 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 3817356  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  3817355 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 3817294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 3811313 - 3811152
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3811313 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 3811214  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  3811213 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctacatttccaaca 3811152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 339386 - 339547
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  339386 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 339485  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||| ||| |||||||| ||||||||||||||    
T  339486 gattcataattgttgaacatgttttatgaaatctctttatattaagagctaaatttccaaca 339547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 351801 - 351962
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  351801 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctgtt 351900  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  351901 gattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaaca 351962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 20238966 - 20239127
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20238966 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 20239065  T
Q  117 gat---tcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||   | || ||||||||| ||||||||||| ||||| |||||||||||||||||||||||    
T  20239066 gatgtatgattgttgaacatgttttatgaaatttgtttatattaagacctaaatttccaaca 20239127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 28421103 - 28420941
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28421103 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 28421004  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    |||| |||   ||||||||| ||||||||||||||||| ||| |||| |||||||||||||||    
T  28421003 gatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaacat 28420941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 42767435 - 42767277
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  42767435 tattcctaataccctaattcttaatatccttgataaatcaaatatgtcgtagatccgatcataatcatgttcaatattttgtttgcttccgctattgatt 42767336  T
Q  121 cata---gttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    ||||   ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  42767335 cataattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaaca 42767277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 12804015 - 12804176
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||    
T  12804015 caggtattcttaataccctaattcttaatattcttgataaatcaaacatgtcgtagatccgttcatgttcatgttcaatgttttgcttgcttccgctatt 12804114  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12804115 gattcataatcgttgaacatgttttatgaaatctgtttttattaagacctaaatttccaaca 12804176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 35148149 - 35147985
Alignment:
Q  17 caggtattcctaataccc-taattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35148149 caggtattcctaatacccctaattcttaatatccttgataaatcaaacgtgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 35148050  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacct-aaatttccaacat 176  Q
     |||| |||   ||||||||| ||||||||||||||||||||||||||| | |||||||||||||    
T  35148049 cgatttataattgttgaacatgttttatgaaatctgtttttattaagacataaaatttccaacat 35147985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 5849540 - 5849702
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||    
T  5849540 caggtattcctaatatcctaattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttggttgcttccgctatt 5849639  T
Q  117 gattcata---gttgaacat-attttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||    |||||||| ||||||| |||| ||||||||||||||||||||||| |||||    
T  5849640 gattcataatcattgaacataattttataaaatttgtttttattaagacctaaatttgcaaca 5849702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 5979318 - 5979155
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||    
T  5979318 caggtattcctaataccctaattcttaacatccttaataaatcaaacatgtcgtagatccaatcataatcatgttcaatagtttgtttgctttcgctatt 5979219  T
Q  117 gatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaacat 176  Q
    ||||    || ||| ||||| | ||||||||||||||||| |||||||||||||||| ||||||    
T  5979218 gatttacgattgttcaacatgtattatgaaatctgtttttaattaagacctaaattttcaacat 5979155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 17 - 160
Target Start/End: Original strand, 43540000 - 43540146
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||  ||||||||||    
T  43540000 caggtattcataataccctaatttttaatattcttgataaatcaaacatgttgtagatccgatcataatcatgttcaatattttatttaattccgctatt 43540099  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaaga 160  Q
    ||||||||    |||||||| || |||||||||||||||||||||||    
T  43540100 gattcataattattgaacatgttctatgaaatctgtttttattaaga 43540146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 26383642 - 26383806
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 117  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| | | |||    
T  26383642 aggtattcctaataccctaattcttagtatgcttgataaatcaaacatgtcgtagatccgatcatgatcatgttcaatattttgtttgtttctgttgttg 26383741  T
Q  118 attcata---gttgaacatattttatgaaatctgt----ttttattaagacctaaatttccaaca 175  Q
    |||||||   ||||||||| | ||||||||||| |    ||||||| |||| |||||||||||||    
T  26383742 attcataattgttgaacatgtcttatgaaatctattctgttttatttagacttaaatttccaaca 26383806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 22742067 - 22741901
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  22742067 caggtattcctaatacc-taatcctcaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttcagtttgcttccgctatt 22741970  T
Q  117 g-------attcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |       |||||||   ||||||||| |||||||||| ||||| ||||| ||||||||||||||||||    
T  22741969 gttgattcattcataattgttgaacatgttttatgaaacctgttcttattgagacctaaatttccaaca 22741901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 30219386 - 30219283
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||| ||||| |||||||||| |||||||||| |||||||| |||||    
T  30219386 tattcctaataccataattcttaatatctttaataaatcaaacatgtcgtagatccgttcatattcatgttcaacgttttgtttgattccgctaatgatt 30219287  T
Q  121 cata 124  Q
    ||||    
T  30219286 cata 30219283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 286
Target Start/End: Complemental strand, 34801545 - 34801436
Alignment:
Q  177 tgggagcactttcaaatcttcatggatcactatccattacaaaattagagaatgttacaaacaactttgaagcctcggaggcaaagataatggataagaa 276  Q
    ||||| |||||||| |||||||||||||||| || || |  ||||||||||||||||  | || ||||||||| |||||||| | |||||| ||||||||    
T  34801545 tgggaacactttcagatcttcatggatcactttcaatcaagaaattagagaatgttaacagcagctttgaagcgtcggaggccaggataatagataagaa 34801446  T
Q  277 gtaccttgag 286  Q
    ||||||||||    
T  34801445 gtaccttgag 34801436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 18666622 - 18666547
Alignment:
Q  34 ctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttcc 110  Q
    |||||| |||||||| ||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  18666622 ctaattattaatatcattgctaaatcaaacatgtcgta-atctgatcataatcaagttcaatgttttgtttgcttcc 18666547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 170
Target Start/End: Original strand, 26381136 - 26381239
Alignment:
Q  69 gtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaa 165  Q
    ||||||| |||||| |||||||||||| || |||||| || | |  ||||||||||   ||||||||| | |||||||||||  ||||||| ||||||||    
T  26381136 gtagatctgatcatgatcatgttcaatattgtgtttgttttcccccttgattcataattgttgaacatgtcttatgaaatct-attttatttagacctaa 26381234  T
Q  166 atttc 170  Q
    |||||    
T  26381235 atttc 26381239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 32035430 - 32035269
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32035430 caggtattcctaataccctaattcttaataaccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 32035331  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  32035330 gattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttccaaca 32035269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 4580465 - 4580303
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4580465 caggtattcctaataccctaattcttaatatccttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 4580366  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  4580365 gattcatagttgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacat 4580303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 8650947 - 8650786
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8650947 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 8650848  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||| |||||||| |||||    
T  8650847 gattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttacaaca 8650786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 21191010 - 21190845
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21191010 caggtatttctaataccctaattcttaatatctttgataaatcaaatatatcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 21190911  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacattgg 179  Q
    ||||||||   ||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  21190910 gattcataattgttgaacatattttatgaaatctgtttataataagacctaaatttccaacattgg 21190845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 8662922 - 8662764
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8662922 gtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 8662823  T
Q  120 tcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||   ||||||||| ||||||||||||||||| |||||||| |||||||| |||||    
T  8662822 tcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttacaaca 8662764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 21782893 - 21782736
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21782893 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 21782794  T
Q  121 cata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
     |||   ||||||||| | ||||||||||||||| |||||||||||||||||| ||||    
T  21782793 tataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttctaaca 21782736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 176
Target Start/End: Original strand, 25354227 - 25354389
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25354227 caggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgctttgtttgcttccgctatt 25354325  T
Q  117 gatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaacat 176  Q
    ||||    || ||||||||| | ||||||||||||||||| ||||||| |||||||||||||||    
T  25354326 gatttacgattgttgaacatgtattatgaaatctgtttttaattaagatctaaatttccaacat 25354389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 31756355 - 31756196
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||    
T  31756355 tattcataataccctaattcttaatatccttgataattcaaacatgtcgtagatccgattataatcatgttcaatgttttatttgcttccgttgttgatt 31756256  T
Q  121 cata---gttgaacatattttatgaaatctg--tttttattaagacctaaatttccaaca 175  Q
    ||||   ||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  31756255 cataattgttgaacatgttttatgaaatctgtttttttattaagacctaaatttccaaca 31756196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 21197163 - 21197004
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||  |||||||| |||||||||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  21197163 caggtattcataatac--taattcttgatatccttgataaatcaaacatgttgtagatccgttcatacttatgttcaatgttttgtttgcttccgctatt 21197066  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  21197065 gattcataatcgttgaacatgttttatgaaatctgtttttactatgacctaaatttccaaca 21197004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 18778598 - 18778760
Alignment:
Q  17 caggtattcctaataccc-taattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||| |||| |||||||||||||  ||||||||||||| | |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  18778598 caggtattcctaaaacccctaattcttaatata-ttgataaatcaaatacgtcgtagatccgatcataattatgttcaacgttttgtttgcttccgctat 18778696  T
Q  116 tgattcata---gttgaacat-attttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||||||    ||||||||  ||||||||||| |||||| ||||||||||||||||||||||    
T  18778697 tgattcataattattgaacatgtttttatgaaatttgttttaattaagacctaaatttccaaca 18778760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 25343641 - 25343742
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 117  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25343641 aggtattcctaatactctaattcttaatatc-ttgataaatcaaaaatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttctgctattg 25343739  T
Q  118 att 120  Q
    |||    
T  25343740 att 25343742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 21783452 - 21783350
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||    
T  21783452 tcaggtattcctaatac--taattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctat 21783355  T
Q  116 tgatt 120  Q
    |||||    
T  21783354 tgatt 21783350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 21789675 - 21789573
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||    
T  21789675 tcaggtattcctaatac--taattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctat 21789578  T
Q  116 tgatt 120  Q
    |||||    
T  21789577 tgatt 21789573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 17581673 - 17581797
Alignment:
Q  49 cttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattc---atagttgaacatattttatgaaat 145  Q
    |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||   |||||||||||| ||||||||| |    
T  17581673 cttggtaaatcaaacatgtcgtagatcctataataatcatgttcaatgttttgtttgcttccgctatcgattcataatagttgaacatgttttatgaatt 17581772  T
Q  146 ctgtttttattaagacctaaatttc 170  Q
     |||||||||| ||| |||||||||    
T  17581773 atgtttttatttagatctaaatttc 17581797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 21770701 - 21770546
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||| ||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| ||||| ||||    
T  21770701 tcagatattcctaatac--taattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttgtttacttcctctat 21770604  T
Q  116 tgatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaattt 169  Q
    | |||    || ||||| ||| | ||||||||||||||||| ||||||||||||||||    
T  21770603 taatttacgattgttgatcatgtattatgaaatctgtttttaattaagacctaaattt 21770546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 6097999 - 6098158
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta-ttga 118  Q
    ||||||||||||||||||||||||| || |||||||||||||||| |||||||||||| ||    |||||||||||||||||| | ||||||||| ||||    
T  6097999 gtattcctaataccctaattcttaacat-cttgataaatcaaacacgtcgtagatccgttc---ttcatgttcaatgttttgtctacttccgctatttga 6098094  T
Q  119 ttcata------gttgaacatattttatgaaatctg-tttttattaagacctaaatttccaaca 175  Q
    ||||||      ||||||||| ||||||||||| || ||||||||||||||||| ||| |||||    
T  6098095 ttcataattgttgttgaacatgttttatgaaatttgttttttattaagacctaagttttcaaca 6098158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 34603457 - 34603368
Alignment:
Q  34 ctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata 124  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  34603457 ctaattgttaatatccttgataaatcaaacatgccatagatccgatcataattatgttcaatgctttgtttgctt-cgctatttattcata 34603368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 34724734 - 34724645
Alignment:
Q  34 ctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata 124  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  34724734 ctaattgttaatatccttgataaatcaaacatgccatagatccgatcataattatgttcaatgctttgtttgctt-cgctatttattcata 34724645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 6102693 - 6102803
Alignment:
Q  72 gatccgatcataatcatgttcaatgttttgtttgcttccgctatt-gattcata------gttgaacatattttatgaaatctg-tttttattaagacct 163  Q
    |||||| ||||| | |||||||||||||||| ||||||||||||| |||||||       ||||||||||||||||||||| || ||||||| |||||||    
T  6102693 gatccgttcatattgatgttcaatgttttgtctgcttccgctatttgattcatgattgttgttgaacatattttatgaaatatgttttttatgaagacct 6102792  T
Q  164 aaatttccaac 174  Q
    |||||||||||    
T  6102793 aaatttccaac 6102803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 1106229 - 1106294
Alignment:
Q  18 aggtattcctaataccct-aattcttaatatccttgataaatcaaacatgtcgtagatccgatcat 82  Q
    |||||||||||||||| | |||| ||||||| |||||| |||||||||||| ||||||||||||||    
T  1106229 aggtattcctaataccttgaattattaatattcttgatgaatcaaacatgttgtagatccgatcat 1106294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 17900284 - 17900176
Alignment:
Q  15 atcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 114  Q
    ||||| |||||| |||||| | ||| ||||||||||||||  | ||||||||| |||||| ||| |||| | |||| |||| |||||||||||||| |||    
T  17900284 atcagatattccaaatacc-tgattattaatatccttgatggaccaaacatgttgtagattcgaacatatttatgtacaattttttgtttgcttccccta 17900186  T
Q  115 ttgattcata 124  Q
     | |||||||    
T  17900185 ataattcata 17900176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 17055937 - 17055775
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17055937 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 17055838  T
Q  117 gattcata---gttgaacatattttatgaaatctg-tttttattaagacctaaatttccaaca 175  Q
    ||||||||   |||||||||||||||||||| ||| |||||||||||||||||||||| ||||    
T  17055837 gattcataattgttgaacatattttatgaaaactgttttttattaagacctaaatttcgaaca 17055775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 10244478 - 10244317
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10244478 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 10244379  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  10244378 gattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaaca 10244317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 11839869 - 11839708
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11839869 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 11839770  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | | ||||||||||||| |||||||||||||||||||||||    
T  11839769 gattcataattgttgaacatgtatcatgaaatctgtttatattaagacctaaatttccaaca 11839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 49157694 - 49157857
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49157694 caggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 49157793  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  49157794 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaacatt 49157857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 10760794 - 10760632
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10760794 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttccgctatt 10760695  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    |||| |||   ||||||||| | |||||||||||||||||| |||||||||||||||||||||    
T  10760694 gatttataattgttgaacatgtattatgaaatctgtttttaataagacctaaatttccaacat 10760632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 30051246 - 30051084
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  30051246 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatctgattataatcatgttcaatattttgtttgcttccgctatt 30051147  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  30051146 gattcataattgttgaacatgttttatgaaatctgtttttattaagacctaaattttcaacat 30051084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 10238356 - 10238195
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10238356 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatctgatcataatcatgttcaatgttttgtttgcttccgctatt 10238257  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  10238256 gattcataattgttgaacatgttttatgaaatctgtttatattaagagctaaatttccaaca 10238195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 49151627 - 49151788
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49151627 caggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 49151726  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  49151727 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 49151788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 11846207 - 11846046
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11846207 caggtattcctaataccctaattcttaatatacttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 11846108  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| | |||| ||||||||||| ||||||||||||||||||||||    
T  11846107 gatttataattgttgaacatgtattataaaatctgttttaattaagacctaaatttccaaca 11846046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 8331802 - 8331963
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8331802 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 8331901  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| |||||| |||||| ||| |||||||| ||||||||||||||    
T  8331902 gatttataattgttgaacatgttttataaaatctatttatattaagagctaaatttccaaca 8331963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 10767015 - 10766854
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  10767015 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccggtcataatcatgttcaatgttttgtttgcttccgctgtt 10766916  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| | ||||||||| |||||||| ||||||||||||||||||||    
T  10766915 gatttataattgttgaacatgtattatgaaatttgtttttaataagacctaaatttccaaca 10766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 55003552 - 55003398
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    |||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  55003552 tatttctaataccctaattcttaatatacttgataaattaaacatgtcgtagatccgatcataatcatgttcaatgttttatttgcttctgctattgatt 55003453  T
Q  121 cata---gttgaacatattttatgaaatctgtttttattaagacctaaatttcca 172  Q
    ||||   ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  55003452 cataattgttgaacatgttttatgaaatctgtttttattaagacctaaatttcca 55003398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 42191364 - 42191203
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42191364 caggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctatt 42191265  T
Q  117 gattc---atagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||   || ||||||||| | ||||||||||| ||| |||||||||||| ||||||||||    
T  42191264 gattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaaca 42191203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 42197306 - 42197145
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42197306 caggtattcctaataccctaattcttaatacccttgataaatcaaacatgtcgtagatccgatcataatcaggttcaatgttttgtttgcttccgctatt 42197207  T
Q  117 gattc---atagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||   || ||||||||| | ||||||||||| ||| |||||||||||| ||||||||||    
T  42197206 gattcacaattgttgaacatgtattatgaaatctatttatattaagacctatatttccaaca 42197145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 28964910 - 28965042
Alignment:
Q  44 atatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcatagttgaacatattttatgaa 143  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  28964910 atatctttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcattgttgaacatgttttatgaa 28965009  T
Q  144 atctgttttt-attaagacctaaatttccaaca 175  Q
    |||||||||| ||||||||||||||||||||||    
T  28965010 atctgtttttaattaagacctaaatttccaaca 28965042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 38449207 - 38449048
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38449207 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 38449108  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| | ||||||||||  ||| |||||||||| ||||||||||||    
T  38449107 gatttataattgttgaacatgtattatgaaatc--tttatattaagaccgaaatttccaaca 38449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 38455694 - 38455535
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38455694 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 38455595  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| | ||||||||||  ||| |||||||||| ||||||||||||    
T  38455594 gatttataattgttgaacatgtattatgaaatc--tttatattaagaccgaaatttccaaca 38455535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 48128194 - 48128030
Alignment:
Q  15 atcaggtattcctaa-taccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgct 113  Q
    |||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  48128194 atcaggtattccaaaataccctaattcttaatattcttaataaatcaaacatgtcgtagaaccgatcataatcatgttcaatgttttgtttgtttccgct 48128095  T
Q  114 attgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||||||||   ||||||||| ||| |||||||||||||||||| ||||||||||||||||||    
T  48128094 attgattcataattgttgaacatgtttcatgaaatctgtttttattgagacctaaatttccaaca 48128030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 53069199 - 53069043
Alignment:
Q  17 caggtattcctaataccc-taattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53069199 caggtattcttaatacccctgattcttaatatccttgataaatcaaacatgtcatagatccgatcataatcatgttcaatgttttgtttgcttccgctat 53069100  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaattt 169  Q
     |||| |||   ||||||||| |||||| ||||||||||||||||||||||||||||    
T  53069099 cgatttataattgttgaacatgttttataaaatctgtttttattaagacctaaattt 53069043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 17593426 - 17593268
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17593426 caggtattcctaataccctaattcttaatattcttgataaattaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcgatt 17593327  T
Q  117 gatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttcc 171  Q
    ||||    || ||||||||| | ||||||||| | ||||| ||||||||||||||||||    
T  17593326 gatttacgattgttgaacatctattatgaaatatatttttaattaagacctaaatttcc 17593268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 34300511 - 34300609
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34300511 tcaggtattcctaataccctaattcttaatatcctttataaatcaaatatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 34300609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 13445077 - 13445229
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||| ||||||||||||||||    
T  13445077 aggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcat----------aatgttttatttgcttccgctattg 13445166  T
Q  118 attcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    ||| |||   ||||||||| || ||| |||||| |||||||| ||||||||||||| ||||||    
T  13445167 atttataattgttgaacatgttctatcaaatctatttttatttagacctaaatttctaacatt 13445229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 46656698 - 46656863
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||| |||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||| || || |||||||| ||| |||| |||||    
T  46656698 tcaggtatttctaataccctcattctcaatatcattgataaatcaaacatatcgtagatccgatcataattatattgaatgttttatttacttcagctat 46656797  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaa-atttccaacatt 177  Q
    | |||||||    |||||||| ||||||||||| |||||||||| ||||||||  |||||||||||    
T  46656798 taattcatatttattgaacatgttttatgaaatatgtttttatttagacctaatttttccaacatt 46656863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 12108812 - 12108716
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttg-tttgcttccgc 112  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||||||||    
T  12108812 tcaggtattcttaatacc-taattgttaatatccttgataaatcaaacatgtcttagatcaaatcataatcatattcaatgttttgatttgcttccgc 12108716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 24643635 - 24643534
Alignment:
Q  78 atcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacatattt--tatgaaatctgtttttattaagacctaaatttcca 172  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||   ||||||||| |||  |||||| | || |||||||||||||||||||||||    
T  24643635 atcataatcatgttcaatgttttatttacttccgctattgattcataaatgttgaacatgttttatatgaagtttg-ttttattaagacctaaatttcca 24643537  T
Q  173 aca 175  Q
    |||    
T  24643536 aca 24643534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 233
Target Start/End: Complemental strand, 6058905 - 6058847
Alignment:
Q  175 attgggagcactttcaaatcttcatggatcactatccattacaaaattagagaatgtta 233  Q
    |||||||| ||||||||||||||||||||| || || ||||  || |||||||||||||    
T  6058905 attgggaggactttcaaatcttcatggatctctttcaattaggaagttagagaatgtta 6058847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 34740000 - 34740158
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34740000 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 34740099  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttcc 171  Q
    |||||||||   | ||||||| ||||||||||||||||| |||||||||||||||||||    
T  34740100 tgattcataattgatgaacatgttttatgaaatctgtttatattaagacctaaatttcc 34740158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 25387648 - 25387487
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25387648 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 25387549  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||| ||| ||||||||||    
T  25387548 gattcatatttgttgaacatgttttatgaaatctgtttatattaagatctatatttccaaca 25387487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 25381679 - 25381518
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25381679 caggtattcctaataccctaattcttaatatccttggtaaatcaaacatttcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 25381580  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  25381579 gattcatagttgttgaacatgtattatgaaatctgtttatattaagacctatatttccaaca 25381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 50306205 - 50306365
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50306205 caggtattcctaatagcctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgattataatcatgttcaatgttttgtttgcttccgctatt 50306303  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  50306304 gattcataattgttgaacatgttttatgaaatctgtttatattaagacctaaatttccaaca 50306365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 1078239 - 1078400
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1078239 caggtattcttaataccctaattcttaatattcttggtaaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 1078338  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  1078339 gattaataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 1078400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 44410027 - 44410186
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||    
T  44410027 caggtattcctaatac--taattcttgatatccttgataaatcaaacatgtcgtagatccgttcatatttatgttcaatgttttgtttgcttccgctatt 44410124  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  44410125 gattcataatcgttgaacatgttttatgaaatctgtttttagtaagacctaaatttccaaca 44410186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 24963852 - 24963685
Alignment:
Q  11 catcatcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttcc 110  Q
    |||| |||||||||||||||||  ||||||||| ||| |||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||    
T  24963852 catcttcaggtattcctaatactttaattcttactattcttgataaatcaaacatggcgtagatccgttcatattcatgttcaatgttttgtttgcttcc 24963753  T
Q  111 gctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||||||||   ||||||||| |||||||||||||||||||||||||| |||||||| |||||    
T  24963752 gctattgattcatattcgttgaacatgttttatgaaatctgtttttattaagatctaaattttcaaca 24963685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 31058063 - 31058220
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31058063 gtattcttaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 31058161  T
Q  120 t---catagttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |    || ||||||||| | ||||||||||||||| |||||||||||||||||| ||||    
T  31058162 ttacgattgttgaacatgtattatgaaatctgtttatattaagacctaaatttctaaca 31058220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 24926904 - 24926738
Alignment:
Q  11 catcatcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttcc 110  Q
    |||| |||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||    
T  24926904 catcttcaggtattcctaatacgttaattcttaatattcttgataaatcaaacatgtcgtagatccgttcatattaatgttcaatgttttggttgcttcc 24926805  T
Q  111 gctattgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||||||||   ||||||||| ||||||| ||||||||||||||||||||||||||| |||||    
T  24926804 gctattgattcataatcgttgaacatgttttatg-aatctgtttttattaagacctaaattttcaaca 24926738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 12183728 - 12183561
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||    
T  12183728 tcaggtattcctaatactcaaattcttaatatc-ttgataaatcaaacatgtcgtagatccaatcataattatgttcaatattttgtttgcttccactat 12183630  T
Q  116 tgattcata--------gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    |||||||||        ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  12183629 tgattcataattatattgttgaacatattttatgaaatctatttttattaagaactaaatttccaacat 12183561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 31051560 - 31051718
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31051560 caggtattcttaataccctaattcttaatatc-ttgataaatcaaacatgtcgtagatccaatcataatcatgttcaatgttttgtttgcttccgctatt 31051658  T
Q  117 gatt---catagttgaaca-----tattttatgaaatctgtttttattaagacctaaatt 168  Q
    ||||    || ||||||||     |||  |||||||||||||| ||||||||||||||||    
T  31051659 gatttacgattgttgaacatgtattatgatatgaaatctgtttatattaagacctaaatt 31051718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 8092990 - 8092887
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  8092990 caggtattcctcatacccaaattcttaatatccttgataaatcaaacatgtcatagatccgatcataatcatgttcaatgttttatttgcttctgctatt 8092891  T
Q  117 gatt 120  Q
    ||||    
T  8092890 gatt 8092887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 57 - 176
Target Start/End: Original strand, 27955216 - 27955337
Alignment:
Q  57 atcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat--tcatagttgaacatattttatgaaatctgttttta 154  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  | ||  || ||||| ||||||||||||||||||||    
T  27955216 atcaaacatgttgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattatgattattaaacatgttttatgaaatctgttttta 27955315  T
Q  155 ttaagacctaaatttccaacat 176  Q
    |||||||||||||||| |||||    
T  27955316 ttaagacctaaatttctaacat 27955337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 38152114 - 38151973
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||      | |||||||||||| ||||||||||||||||| |    
T  38152114 tcaggtattcctaataccctaattcttaatatgtttgataaatcaaacatgtcgtagatc------tgatcatgttcaatattttgtttgcttccgctgt 38152021  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagac 161  Q
    ||||| |||   ||||||||| |||||||||||||  ||||||||||||    
T  38152020 tgattaataattgttgaacatgttttatgaaatct-attttattaagac 38151973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 5550 - 5711
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5550 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 5649  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||| ||| |||| ||||||||||||||    
T  5650 gattcataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaaca 5711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 28525530 - 28525369
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525530 caggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 28525431  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  28525430 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 28525369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 28531626 - 28531465
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28531626 caggtattcataataccctaattcttaatatccttaataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 28531527  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| | ||||||||||||||| |||||||||||||||||||||||    
T  28531526 gattcataattgttgaacatgtattatgaaatctgtttatattaagacctaaatttccaaca 28531465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 12686323 - 12686162
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12686323 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 12686224  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| ||||||||||||||||| ||| |||| ||||||||||||||    
T  12686223 gatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaaca 12686162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 12692425 - 12692264
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12692425 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 12692326  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   ||||||||| ||||||||||||||||| ||| |||| ||||||||||||||    
T  12692325 gatttataattgttgaacatgttttatgaaatctgtttatatcaagagctaaatttccaaca 12692264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 7389691 - 7389530
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  7389691 caggtattcctaataccctaattcttaatatc-ttgataaatcaaacatgtcgtggatccgatcataatcatgttcaatgttttgtttgcttccgctatt 7389593  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacat 176  Q
    ||||||||   ||||||||| | ||||||||| ||||| ||||||||||||||||||||||||    
T  7389592 gattcataattgttgaacatgtattatgaaatttgtttatattaagacctaaatttccaacat 7389530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 41297292 - 41297455
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  41297292 caggtattcctaataccctaattctttatatccttgataaatcaaacatgtcgtagatccgatcataattatgttcaatgttttgtttgcttctgctatt 41297391  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    ||||||||   ||||||||| | ||||||||||| ||| |||||||||| ||||||||||||||    
T  41297392 gattcataattgttgaacatgtattatgaaatctctttatattaagacccaaatttccaacatt 41297455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 24054349 - 24054502
Alignment:
Q  17 caggtattcctaata-ccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24054349 caggtattcctaatatcccaaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 24054448  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaa 166  Q
     |||| |||   ||||||||| ||||||||||||||||||||||||||||||||    
T  24054449 agatttataattgttgaacatgttttatgaaatctgtttttattaagacctaaa 24054502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 32094304 - 32094142
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32094304 tcaggtattcctaatacc-taattcttaatatccttgataaatcaaacatgtcgtagatcctatcataatcatgttcaatgttttgtttgcttccgctat 32094206  T
Q  116 tgatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    |||||    || ||||||||| | |||| |||||||||||| ||||||||||||||||||||||    
T  32094205 tgatttacgattgttgaacatgtattataaaatctgtttttaattaagacctaaatttccaaca 32094142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 32097105 - 32096943
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctat 115  Q
    ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  32097105 tcaggtaatcctaatacc-taattcttaatatccttgataaatcaaacatgtcgtagatcctatcataatcatgttcaatgttttgtttgcttccgctat 32097007  T
Q  116 tgatt---catagttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    |||||    || ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  32097006 tgatttacgattgttgaacatgtattatgaaatctgtttttaattaagacctaaatttccaaca 32096943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 30384521 - 30384359
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  30384521 caggtattcttaatacccttattcttaatatccttgataaatcagacatgtc-tagatccgatcataatcgtgttcaatgttttgtttgcttccgctatt 30384423  T
Q  117 gattcata---gttgaacatattttatgaaatctg--tttttattaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  30384422 gattcataattgttgaacatgttttatgaaatctgtttttttattaaaacctaaatttccaaca 30384359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 16215309 - 16215157
Alignment:
Q  26 ctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata- 124  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||     
T  16215309 ctaataccctaatttttaatatccttgataaatcaaacatttcgtagatccaatcataatcatgttaaatgttttgtttgcttccgctattgattcataa 16215210  T
Q  125 --gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
      |||||| || | ||||||||||||||||||| |||||||||||||| ||||    
T  16215209 ttgttgaatatgtgttatgaaatctgtttttataaagacctaaatttctaaca 16215157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 19066249 - 19066091
Alignment:
Q  19 ggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattga 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | |||||||||||||||||||||| |||    
T  19066249 ggtattcctaataccataattcttaatatccttgataaatcaaacatgtcgtagatccgttcatattcatgcttaatgttttgtttgcttccgctaatga 19066150  T
Q  119 ttcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaac 174  Q
    || |||   |||||||||  |||||||||| ||||||||||||||| ||||||||||||    
T  19066149 tttataatcgttgaacatggtttatgaaatatgtttttattaagacttaaatttccaac 19066091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 19059908 - 19059747
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||| |||||||||||||| ||| |    
T  19059908 caggtatttctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgtttatattcatgtttaatattttgtttgcttcccctaat 19059809  T
Q  117 gattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||| |||   |||||| |  ||||||||||| |||||||||||||||||||||||||||||    
T  19059808 gatttataatcgttgaatacgttttatgaaatatgtttttattaagacctaaatttccaaca 19059747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 30772298 - 30772460
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatg-ttttgtttgcttccgctat 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||| || |    
T  30772298 caggtaatcctaataccctaattcttaatatccttgataaatcaaacatgttgtcgatccgatcataatcatgttcattgtttttgtttgcttccactgt 30772397  T
Q  116 tgattcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    | |||||||    |||||||| ||||||||||| | |||||||||||| ||||||||||||||    
T  30772398 ttattcataattattgaacatgttttatgaaatttatttttattaagaactaaatttccaaca 30772460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 175 - 354
Target Start/End: Original strand, 41934450 - 41934626
Alignment:
Q  175 attgggagcactttcaaatcttcatggatcactatccattacaaaattagagaatgttacaaacaactttgaagcctcggaggcaaagataatggataag 274  Q
    ||||||||||||||||||||||||||||||||| || |||   || ||||||||||| || |||||||||||||| || ||||||||||||||||   |     
T  41934450 attgggagcactttcaaatcttcatggatcactttcaattgagaagttagagaatgtgaccaacaactttgaagcatcagaggcaaagataatgg---ac 41934546  T
Q  275 aagtaccttgagagattattattgtcatggtctcaagatgtaaaggatcattttacagattcgcaaagtgagatggatat 354  Q
    ||| ||||||||| |||| ||||||||||||||| ||||| || | || |||||||||||||||||||||||||||||||    
T  41934547 aagcaccttgagaaattactattgtcatggtctctagatgcaatgaataattttacagattcgcaaagtgagatggatat 41934626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 37 - 169
Target Start/End: Original strand, 14610184 - 14610321
Alignment:
Q  37 attcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcata---gttgaacat 133  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| |||||||   |||||||||    
T  14610184 attcttaatatccttgataaatcaaacatgtcgtaaatccgatcataatcatgttcaatggtttatttgcttccgctattaattcataattgttgaacat 14610283  T
Q  134 attttatgaaatctg--tttttattaagacctaaattt 169  Q
     ||||||||||||||  ||||| |||||||||||||||    
T  14610284 gttttatgaaatctgtttttttgttaagacctaaattt 14610321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 165
Target Start/End: Original strand, 26509871 - 26510013
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    ||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| |   |||||||| |||||||||||||||||||||||| |||||   |    
T  26509871 tattcctaatacc-taattcttaatatc-ttgatgaatcaaatatgtcgtagtttatatcataattatgttcaatgttttgtttgcttccactatttcat 26509968  T
Q  121 catagttgaacatattttatgaaatctgtttttattaagacctaa 165  Q
     ||  |||||||| |||||||||||||||||||||| || |||||    
T  26509969 aatgattgaacatgttttatgaaatctgtttttatttaggcctaa 26510013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 28542269 - 28542336
Alignment:
Q  33 cctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgtttt 100  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  28542269 cctaattcttaatatccttgataaatcaaacatgtcgtagtttcgatcataatcatgttcaatgtttt 28542336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 20500153 - 20500231
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaat 95  Q
    |||||||| ||||||| |||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  20500153 caggtatttctaatactctaattcttagtatccttgataaatcaagtatgtcgtagatccgatcataatcatgttcaat 20500231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 26316922 - 26316782
Alignment:
Q  31 accctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt---catagtt 127  Q
    ||||||||| |||||| | | ||||||||||||||||| ||||||| |||||| | |||||||||||||| ||||||||| ||||| |||    ||  ||    
T  26316922 accctaattattaataccgtagataaatcaaacatgtcctagatccaatcatattaatgttcaatgttttttttgcttccactattaatttaaaattatt 26316823  T
Q  128 gaacatattttatgaaatctgtttttattaagacctaaatt 168  Q
    |||||| ||||||||||| |||||||||  |||||||||||    
T  26316822 gaacatgttttatgaaatatgtttttatgtagacctaaatt 26316782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 123
Target Start/End: Complemental strand, 37896423 - 37896336
Alignment:
Q  36 aattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgattcat 123  Q
    |||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||  |||| ||| |||| ||| |||||||||    
T  37896423 aattattaatattcttgataaatcaatcatgtcgtagatccgatcataatcatgttcaacattttatttacttctgctgttgattcat 37896336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 8706498 - 8706454
Alignment:
Q  125 gttgaacatattttatgaaatctgtttttattaagacctaaattt 169  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  8706498 gttgaacatattttatgaaatctatttttattaagacctaaattt 8706454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Complemental strand, 8706567 - 8706532
Alignment:
Q  16 tcaggtattcctaataccctaattcttaatatcctt 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  8706567 tcaggtattcctaataccctaattcttaatatcctt 8706532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 33849030 - 33848933
Alignment:
Q  18 aggtattcctaataccctaattcttaatatccttgataaatcaaa---catgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgcta 114  Q
    |||||||||||||||| ||||| ||| |||| |||||| |||||    |||||||||||| ||||||||  |||| |||| ||||| |||||||||||||    
T  33849030 aggtattcctaatacc-taattattagtatc-ttgatagatcaacatgcatgtcgtagattcgatcatatccatgctcaaagttttttttgcttccgcta 33848933  T

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Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 33753350 - 33753294
Alignment:
Q  63 catgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    ||||| |||||| |||||||| ||||| |||| ||||| ||||||||||||| ||||    
T  33753350 catgttgtagattcgatcatattcatgctcaaagttttttttgcttccgctaatgat 33753294  T

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Target: scaffold0440 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 17 - 175
Target Start/End: Complemental strand, 1338 - 1176
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  1338 caggtattcctaataccctaattcttaatatccttgataaatcaaacatatcgtagatccgatcataatcatgttcaatgttttgtttgcttccgccttt 1239  T
Q  117 gattcata---gttgaacatattttatgaaatctgttttt-attaagacctaaatttccaaca 175  Q
    ||||||||   ||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1238 gattcataattgttgaacatgttttatgaaatctgtttttaattaagacctaaatttccaaca 1176  T

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Target: scaffold0012 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 173031 - 172873
Alignment:
Q  20 gtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgat 119  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  173031 gtattcctaatatcctaattcttaatatccttgataaattaaacatgtcgtagatccgatcataatcattttcaatgttttgtttgcttccgctattgat 172932  T
Q  120 tcata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    |||||   || |||||| |||||||||| |||||| ||||||||||||||||| |||||    
T  172931 tcataattgtagaacatgttttatgaaacctgtttatattaagacctaaattttcaaca 172873  T

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Target: scaffold0208 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 6538 - 6699
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||||    
T  6538 caggtattcctaatagcctaattcttaatatccttgataaatcaaacatgttgtagattcagtcataatcatgttcaatgttttgtttgcttccgctatt 6637  T
Q  117 gattcata----gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||||||    |||||||||  |||||||||| ||||| |||||||| ||||||||||||||    
T  6638 gattcataaattgttgaacatggtttatgaaat-tgtttatattaagagctaaatttccaaca 6699  T

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Target: scaffold0208; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 12415 - 12572
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||    
T  12415 tattcctaatagcctaattcttaatatccttgataaatcaaacatgtcgtagattcgatcataattatgttcaatgttttatttgcttccgctattgatt 12514  T
Q  121 cata----gttgaacatattttatgaaatctgtttttattaagacctaaatttccaaca 175  Q
    ||||    |||||| ||  |||||||||| ||||| |||||||| ||||||||||||||    
T  12515 cataaattgttgaatatggtttatgaaat-tgtttatattaagagctaaatttccaaca 12572  T

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Target: scaffold1114 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 1107 - 1263
Alignment:
Q  21 tattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    |||| ||||||| |||||| ||||||| | |||||| ||||||||||||| ||||||||||||||||| |  ||    |||||||||| || ||||||||    
T  1107 tatttctaatactctaattgttaatatgcatgataagtcaaacatgtcgttgatccgatcataatcatatctaaa---ttgtttgctttcgatattgatt 1203  T
Q  121 cata---gttgaacatattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    ||||   ||||||||| |||||||||||||||||||||||||| || |||||||||||||    
T  1204 cataatggttgaacatgttttatgaaatctgtttttattaagatctgaatttccaacatt 1263  T

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Target: scaffold0085 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 38445 - 38606
Alignment:
Q  17 caggtattcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctatt 116  Q
    ||||||||||||||||| ||||| ||||||| ||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||| || ||    
T  38445 caggtattcctaatacc-taattattaatattcttgataaa-caaacatgttgtagatccgatcataactatgttcaatgttttgtttgcttccactgtt 38542  T
Q  117 gat---tcatagttgaacatattttatgaaatctgtttttattaagacctaaatttccaacatt 177  Q
    |||   | ||  |||||||| | |||||||||||| ||||||| |  ||||||||||| |||||    
T  38543 gatttctaatgattgaacatgtcttatgaaatctggttttatttaatcctaaatttccgacatt 38606  T

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Target: scaffold0185 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 5945 - 6041
Alignment:
Q  23 ttcctaataccctaattcttaatatccttgataaatcaaacatgtcgtagatccgatcataatcatgttcaatgttttgtttgcttccgctattgatt 120  Q
    ||||||||||| |||||  ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | ||||||||||||    
T  5945 ttcctaatacc-taattaataatatttttgataaatcaaacatgtcgtagatccgatcatattcatgttcaatgttttgtttaatgccgctattgatt 6041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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