View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1983_low_9 (Length: 325)
Name: NF1983_low_9
Description: NF1983
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1983_low_9 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 45622235 - 45621930
Alignment:
| Q |
9 |
caagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggcca |
108 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45622235 |
caagcaccgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacccgatgtccctggttccctatctcactatctaggcca |
45622136 |
T |
|
| Q |
109 |
cgcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45622135 |
cgcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaat |
45622036 |
T |
|
| Q |
209 |
ataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtgggttgttt |
308 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45622035 |
ataaattcgctaaagagttgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtgggttgttt |
45621936 |
T |
|
| Q |
309 |
cttcat |
314 |
Q |
| |
|
|||||| |
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|
| T |
45621935 |
cttcat |
45621930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 22603763 - 22603451
Alignment:
| Q |
1 |
ccgacatgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactat |
100 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
22603763 |
ccgacctgcaagcactgaagttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgtgacacgatgtccctggttccctatctcactat |
22603664 |
T |
|
| Q |
101 |
ctaggccacgcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22603663 |
ctaggccacgcctcccctacaataatgaaggcaaaa-ttgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaat |
22603565 |
T |
|
| Q |
201 |
ggataaatataaaatcgctaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtg |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22603564 |
ggataaatataaaatcactaaagaattgtttattgcactgaaacaaaaatcaaaagaaaaatgcatgcaccatggaacactcaggaaaccgctattggtg |
22603465 |
T |
|
| Q |
301 |
ggttgtttcttcat |
314 |
Q |
| |
|
|||||||||||||| |
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|
| T |
22603464 |
ggttgtttcttcat |
22603451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 20188544 - 20188258
Alignment:
| Q |
28 |
ttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctcccctacaataatg |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
20188544 |
ttgtattttacctgttgcacattaccctagaaaaagaatgcagcgcgatgtccctggttccctatctcactatctaggccactcctcccctacaataatg |
20188445 |
T |
|
| Q |
128 |
aaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaaatcgctaaagaatt |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
20188444 |
aaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatgcataaatataaaatcactaaagaatt |
20188345 |
T |
|
| Q |
228 |
gtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtgggttgtttcttcat |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
20188344 |
gtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtggggtgtttcttcat |
20188258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 100 - 290
Target Start/End: Complemental strand, 51091788 - 51091591
Alignment:
| Q |
100 |
tctaggccacgcctcccctacaataatgaaggcaaaaattgaagaacaaatttttgttgagaac-ataataggaaagaaatgaaggatataatagaaaca |
198 |
Q |
| |
|
|||||| ||| ||||||| |||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||||| ||||||||||||||||| |
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|
| T |
51091788 |
tctaggtcactcctcccccacaataatgaaggcaaaatttgaagaaaaaaaaatggttgataaatataataggaaagaaatgtaggatataatagaaaca |
51091689 |
T |
|
| Q |
199 |
atggataaatataaaatcgctaaagaattgtttattgcactgaaactga----aatcaaaagaaaaatgcatgcacc--atggaacattcaggaaacc |
290 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||||||| |||||| |
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|
| T |
51091688 |
attgatgaatataaaatcactaaagaattgtttattgcactgaaactgaaattaattaaaagaaaaatgcatgcaccttaaggaacattcatgaaacc |
51091591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 15214161 - 15214447
Alignment:
| Q |
28 |
ttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctcccctacaataatg |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
15214161 |
ttgtattttacctgttgcacgttaccctagaaaaagaatgtggcacgatgtccctggttccctatctcactatccaggccactcctcccctacaataatg |
15214260 |
T |
|
| Q |
128 |
aaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaaatcgctaaagaatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
15214261 |
aaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaaatcactaaagaatt |
15214360 |
T |
|
| Q |
228 |
gtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtgggttgtttcttcat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
15214361 |
gtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaatcgctattggtgggttatttcttcat |
15214447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 15253380 - 15253666
Alignment:
| Q |
28 |
ttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctcccctacaataatg |
127 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
15253380 |
ttgtattttacctgttgcacgttaccctagaaaaagaatgtggcacgatgtccctggttccctatctcactatccaggccactcctcccctacaataatg |
15253479 |
T |
|
| Q |
128 |
aaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaaatcgctaaagaatt |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15253480 |
aaggcaaaaattgaagaacaaatttttgttgagaacataataggaaagaaatgaaggatataatagaaacaatggataaatataaaatcactaaagaatt |
15253579 |
T |
|
| Q |
228 |
gtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaaccgctattggtgggttgtttcttcat |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
15253580 |
gtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaacattcaggaaatcgctattggtgggttatttcttcat |
15253666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 131
Target Start/End: Original strand, 22845740 - 22845850
Alignment:
| Q |
20 |
gttggtgtttgtattttacctgttgcacattaccctagaaaaagaatgcgacgcgatgtccctggttccctatctcactatctaggccacgcctccccta |
119 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||| ||| || | |||||| || ||||||||||||||| |||||| ||| ||||||| | |
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|
| T |
22845740 |
gttggtgtttgtattttacttgttgcaccttaccctagtaaaaaaat-cggtgtgatgtctcttgttccctatctcactgtctaggtcactcctccccga |
22845838 |
T |
|
| Q |
120 |
caataatgaagg |
131 |
Q |
| |
|
||||||||||| |
|
|
| T |
22845839 |
taataatgaagg |
22845850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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