View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19840_low_2 (Length: 410)
Name: NF19840_low_2
Description: NF19840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19840_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Complemental strand, 7174209 - 7173817
Alignment:
| Q |
9 |
ttatactcatattcacacagtacacactcacattcatagatgatcacaaccatagttaagggttcaagcataatagctataactccttttgcacgccctt |
108 |
Q |
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| T |
7174209 |
ttatactcatattcacacagtacacactcacattcatagatgatcacaaccatagttaagggttcaagcataatagctataactccttttgcacgccctt |
7174110 |
T |
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| Q |
109 |
aactagtttagctccaagaattaaggcatcgtctaattcttaagataaaaattagaaacactctttttctaacactcgagtataa------ctcatatgg |
202 |
Q |
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| T |
7174109 |
aactagtttagctccaagaattaaggcatcgtctaattcttaagataaaagttagaaacactctttttttaacactcgagtataagtataactcatatgg |
7174010 |
T |
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| Q |
203 |
gttcaccactttatgtggaatccatttccaaaatatgataccgagattggtttcatctaataaatgaaaagaatgagtgttagagatgtcattattagaa |
302 |
Q |
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| T |
7174009 |
gttcatcactttatgtggaattcattttcaaaatatgataccgagattggtttcatccaataaatgaaaagaatgagtgttagagatgtcattattagaa |
7173910 |
T |
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| Q |
303 |
agagagtgctcattgccctcctcaattcttaattgataaaattaaaacaaaggtaagctttgtggccgtactttctttgcagtagcaaatggt |
395 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7173909 |
agatagtgctcattgccctcctcaattcttaattgataaaattaaaacaaaggtaagctttgtggccgtactttctttgcagtagcaaatggt |
7173817 |
T |
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