View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19841_high_10 (Length: 512)
Name: NF19841_high_10
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 77 - 494
Target Start/End: Original strand, 37272589 - 37273006
Alignment:
| Q |
77 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
37272589 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgttaccacaaacaacagaagctga |
37272688 |
T |
|
| Q |
177 |
cccctgttatcactaccagcagcttcagcaattgcagccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37272689 |
cccctgttatcactaccagcagcttcagcaattgcagtcatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaa |
37272788 |
T |
|
| Q |
277 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaat |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37272789 |
gacctaaaccaattataactcctttatcgttacgcatacggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagctatggctggaat |
37272888 |
T |
|
| Q |
377 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37272889 |
taatggtaacaaaagtgctaaaccacggttgtctgatgatccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgtt |
37272988 |
T |
|
| Q |
477 |
gagaatattgcccctgct |
494 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
37272989 |
gagaatattgcccctgct |
37273006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 77 - 181
Target Start/End: Original strand, 37268551 - 37268655
Alignment:
| Q |
77 |
gtttcactgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctga |
176 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |
|
|
| T |
37268551 |
gtttcaccgtctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgcaaccacaaataacagaagctga |
37268650 |
T |
|
| Q |
177 |
cccct |
181 |
Q |
| |
|
|||| |
|
|
| T |
37268651 |
gccct |
37268655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 214 - 447
Target Start/End: Original strand, 20580779 - 20581012
Alignment:
| Q |
214 |
ccatttcactagcaattgcatcttgtgttgatacaaaccctgaagctgctaacccacccccaagacctaaaccaattataactcctttatcgttacgcat |
313 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
20580779 |
ccatttcactagccattgcatcttgtgttgacacaaaccctgaagctgctaacccaccaccaagacccaaaccaatgataactcctttatcgttacgcat |
20580878 |
T |
|
| Q |
314 |
acggttgatttggttaagtgctggttgaagaatgttgtacagaacccaagcaatggctggaattaatggtaacaaaagtgctaaaccacggttgtctgat |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| ||||||| |||| |||||||||||| |
|
|
| T |
20580879 |
acggttgatttggttaagtgctggttgaagaatgttgaacagaaccgaagctatggctggaattaatggtaacagaagtgcttaaccgcggttgtctgat |
20580978 |
T |
|
| Q |
414 |
gatccttctgctatttcagctatttgttgtgctg |
447 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
20580979 |
gatccttctgctatttcagctatctgttgtgctg |
20581012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 39016975 - 39017088
Alignment:
| Q |
86 |
tctcattctgttgatttggttaagagcaggctgcaaaatattataaagaacccaaagaatagctggtgctacaacaaacaacagaagctgacccctgtta |
185 |
Q |
| |
|
|||||| |||||||| ||||| |||||||||||||||||||| || || |||||||| ||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
39016975 |
tctcatcctgttgatctggttgagagcaggctgcaaaatattgtacagcacccaaaggatagctggtgcaacaacaaacaacagaagtgttcccctgttg |
39017074 |
T |
|
| Q |
186 |
tcactaccagcagc |
199 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
39017075 |
tcacttccagcagc |
39017088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 493
Target Start/End: Original strand, 39017300 - 39017376
Alignment:
| Q |
417 |
ccttctgctatttcagctatttgttgtgctgcaaaagctgcatcacaggttgagagtgttgagaatattgcccctgc |
493 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| ||||| ||||| |||||| || | ||| |||||||| ||||| |
|
|
| T |
39017300 |
ccttctgctatttctgctatttgttgagctgcgaaagccgcatcggaggttgcaagggatgaaaatattgctcctgc |
39017376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University