View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_19 (Length: 392)
Name: NF19841_high_19
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 13 - 374
Target Start/End: Complemental strand, 27025344 - 27024988
Alignment:
| Q |
13 |
aatatcttagagattaaactattcaaaaatgatacaatattcattcgaccttacgtgtagtatttgcgaatcaatggtatggcccacgccaggatcatag |
112 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
27025344 |
aatatcttagagattaaactattcaaaaatgata--atattcattcgaccttacgtgtcgtatttgccaatcaatggtatggcccacgccaggatcatag |
27025247 |
T |
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| Q |
113 |
gttttttaatgcatcaatcaataagttaggcatatgagttatattttgttgtcgaccactacaatttaatgttgctgttttgtttttcaccaaaaataaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||||||||| |
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| T |
27025246 |
gttttttaatgcatcaatcaataagttaggcatatgagttatattttgctgtcgaccagaataatt-aatgttgctgttttgtttttcaccaaaaataaa |
27025148 |
T |
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| Q |
213 |
caaggttgcttccttagaaaaaatataaacaaggttgctattttgtcactgtttatgcgatttcaatacaaccaatttgtttataccaactacgctgacc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27025147 |
caaggttgcttccttagaaaaaatataaacaaggttgctatttt--cactgtttatgcgatttcaatacaaccaatttgtttataccaactacactgacc |
27025050 |
T |
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| Q |
313 |
acgcgaggcacgaggggcacgctgacagcgttatctcaaaaattaaataagcatggggtaac |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27025049 |
acgcgaggcacgaggggcacgctgacagcgttatctcaaaaattaaataagcatggggtaac |
27024988 |
T |
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