View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19841_high_20 (Length: 390)

Name: NF19841_high_20
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19841_high_20
NF19841_high_20
[»] chr6 (6 HSPs)
chr6 (57-249)||(32415246-32415439)
chr6 (57-249)||(32421087-32421280)
chr6 (335-380)||(32415523-32415568)
chr6 (335-380)||(32421364-32421409)
chr6 (173-241)||(3779337-3779405)
chr6 (168-216)||(12216767-12216815)
[»] chr8 (5 HSPs)
chr8 (168-239)||(28566105-28566175)
chr8 (168-239)||(28573728-28573798)
chr8 (168-239)||(28783060-28783131)
chr8 (168-245)||(19703492-19703569)
chr8 (168-236)||(36205198-36205266)
[»] chr4 (2 HSPs)
chr4 (129-216)||(34075531-34075618)
chr4 (168-222)||(36421243-36421297)
[»] chr2 (2 HSPs)
chr2 (168-239)||(37480075-37480146)
chr2 (168-204)||(42420304-42420340)
[»] chr1 (4 HSPs)
chr1 (168-239)||(51814494-51814565)
chr1 (175-212)||(24553689-24553726)
chr1 (174-239)||(31166902-31166967)
chr1 (168-242)||(21694443-21694514)
[»] chr7 (1 HSPs)
chr7 (188-236)||(20952174-20952222)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 32415246 - 32415439
Alignment:
Q  57 ctaataatctagaaggtatgataagcttgagaaacaatgaaaattagttaaggtatgacaagnnnnnnn-aacaagctaaattagtcaatctaaattgat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||  |||||||| ||||  ||||| ||    
T  32415246 ctaataatctagaaggtatgataagcttgagaaacaatgaaaattagttaaggtatgacaagttttttttaacaaattaaattagccaattcaaattaat 32415345  T
Q  156 actgaaataagagaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggttgagaaacaat 249  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||    
T  32415346 actgaaataagcgaatctgagaccttgagaaagagcacattctcaggtctcaaaccaatacaaccaggttaacccaagtgggttgagaaacaat 32415439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 57 - 249
Target Start/End: Original strand, 32421087 - 32421280
Alignment:
Q  57 ctaataatctagaaggtatgataagcttgagaaacaatgaaaattagttaaggtatgacaagnnnnnnn-aacaagctaaattagtcaatctaaattgat 155  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||  |||||||| ||||  ||||| ||    
T  32421087 ctaataatctagaaggtatgataagcttgagaaacaatgaaaattagttaaggtatgacaagttttttttaacaaattaaattagccaattcaaattaat 32421186  T
Q  156 actgaaataagagaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggttgagaaacaat 249  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||    
T  32421187 actgaaataagcgaatctgagaccttgagaaagagcacattctcaggtctcaaaccaatacaaccaggttaacccaagtgggttgagaaacaat 32421280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 32415523 - 32415568
Alignment:
Q  335 ggaatcaacaaattctccattgatgaagagtttggtgaacttgatg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32415523 ggaatcaacaaattctccattgatgaagagtttggtgaacttgatg 32415568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 380
Target Start/End: Original strand, 32421364 - 32421409
Alignment:
Q  335 ggaatcaacaaattctccattgatgaagagtttggtgaacttgatg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32421364 ggaatcaacaaattctccattgatgaagagtttggtgaacttgatg 32421409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 3779405 - 3779337
Alignment:
Q  173 tgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggttga 241  Q
    |||||||||||||| ||||||| || || ||||||| ||||||| |  ||||||| | |||||||||||    
T  3779405 tgagaccttgagaaggagcacactcccaagtctcaagccaataccactaggtcaacctaagtgggttga 3779337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 12216815 - 12216767
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatac 216  Q
    |||| |||||||| ||||| |||||||||| |||||| |||||||||||    
T  12216815 gaacctgagacctcgagaaggagcacattcgcaggtcccaaaccaatac 12216767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 28566175 - 28566105
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggtt 239  Q
    ||||||||| ||||||||| ||||||| ||| ||||| ||||||||||| |  ||||||| |||||||||||    
T  28566175 gaacatgag-ccttgagaaggagcacactctaaggtcccaaaccaataccactaggtcaacccaagtgggtt 28566105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 28573798 - 28573728
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggtt 239  Q
    ||||||||| ||||||||| ||||||| ||| ||||| ||||||||||| |  ||||||| |||||||||||    
T  28573798 gaacatgag-ccttgagaaggagcacactctaaggtcccaaaccaataccactaggtcaacccaagtgggtt 28573728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 28783131 - 28783060
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggtt 239  Q
    ||||||||||||||||| | ||||||| || |||||||||| ||||||| | || | ||| |||||||||||    
T  28783131 gaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtgggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 19703492 - 19703569
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggttgagaaa 245  Q
    |||| |||||||||||| | ||||||| ||||||||| ||| ||||||| |  ||| ||| ||||||||||| |||||    
T  19703492 gaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccactaggccaacccaagtgggtttagaaa 19703569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 36205266 - 36205198
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgg 236  Q
    ||||||||||||||||| | ||||||| || ||| |||||||||||||  |||||  ||| ||||||||    
T  36205266 gaacatgagaccttgaggaggagcacactcccagatctcaaaccaataacatcagaccaacccaagtgg 36205198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 216
Target Start/End: Complemental strand, 34075618 - 34075531
Alignment:
Q  129 aagctaaattagtcaatctaaattgatactgaaataagagaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatac 216  Q
    |||||||||||||| |||||||||| ||| || | ||   ||| |||||||||||||| ||| ||||||  || ||||||||||||||    
T  34075618 aagctaaattagtccatctaaattggtacagagagaatctaacctgagaccttgagaaggagtacattcatagatctcaaaccaatac 34075531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 36421243 - 36421297
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcag 222  Q
    ||||||||||||||||||||||||||| || || ||||||| | ||||| |||||    
T  36421243 gaacatgagaccttgagaaagagcacactcgcaagtctcaatctaataccatcag 36421297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 37480146 - 37480075
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggtt 239  Q
    |||| |||||||||||| | ||||||| ||||||||| ||| ||||||| | |||| ||| |||||||||||    
T  37480146 gaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 42420340 - 42420304
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtc 204  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  42420340 gaacatgagaccttgagtaagagcacactctcaggtc 42420304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 51814565 - 51814494
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggtt 239  Q
    |||| |||||||||||| | ||||||| |||||| ||||||  |||||| |||||| ||| |||||||||||    
T  51814565 gaacctgagaccttgaggaggagcacactctcagatctcaagtcaataccatcaggccaacccaagtgggtt 51814494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 212
Target Start/End: Complemental strand, 24553726 - 24553689
Alignment:
Q  175 agaccttgagaaagagcacattctcaggtctcaaacca 212  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  24553726 agaccttgagaatgagcacactctcaggtctcaaacca 24553689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Original strand, 31166902 - 31166967
Alignment:
Q  174 gagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggtt 239  Q
    ||||||||||||| ||||||| ||  |||||||||||||| ||||||| | ||| |||| ||||||    
T  31166902 gagaccttgagaatgagcacaatccaaggtctcaaaccaacacaatcaagccaacccaaatgggtt 31166967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 21694514 - 21694443
Alignment:
Q  168 gaacatgagaccttgagaaagagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgggttgag 242  Q
    |||| ||||||||||||   ||||||| || || ||||||| ||||||| | |||||||| ||||||||||||||    
T  21694514 gaacctgagaccttgag---gagcacactcccaagtctcaagccaataccaccaggtcaacccaagtgggttgag 21694443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 20952174 - 20952222
Alignment:
Q  188 gagcacattctcaggtctcaaaccaatacaatcaggtcaatccaagtgg 236  Q
    ||||||| || |||||| ||||||||||| |||||||||| ||||||||    
T  20952174 gagcacactcccaggtcccaaaccaataccatcaggtcaacccaagtgg 20952222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University