View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_22 (Length: 344)
Name: NF19841_high_22
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 328
Target Start/End: Original strand, 1959193 - 1959505
Alignment:
| Q |
16 |
atttctgcgtttgaaatcaaactctatacctcagggttagtgagagtgatgaagaaatgtaaagaaaagaaagtgatgttgatatccagagagagtaaac |
115 |
Q |
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| T |
1959193 |
atttctgcgtttgaaatcaaactctatacctcagggttagtgaaagtgatgaagaaatgtaaagaaaagaaagtgatgttgatatccagagagagtaaac |
1959292 |
T |
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| Q |
116 |
aataattaaagctagctgcgaagaaattatatgtttttacaaaggcatttcgataaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaa |
215 |
Q |
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| T |
1959293 |
aataattaaagctagctgcgaagaaattatatgcttttacaaaggcatttcgataaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaa |
1959392 |
T |
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| Q |
216 |
agctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctctattgctatccttcagattttgattt |
315 |
Q |
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| T |
1959393 |
agctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttaccgttcatcatctctattgctatccttcagattttgattt |
1959492 |
T |
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| Q |
316 |
tagacatagaaat |
328 |
Q |
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||||||||||||| |
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| T |
1959493 |
tagacatagaaat |
1959505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 169 - 328
Target Start/End: Complemental strand, 2024164 - 2024007
Alignment:
| Q |
169 |
taaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatc |
268 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2024164 |
taaaaagtgtttacaatggactctcaatgt--atatagtttcttcaaagttaactttggttgacattttctctatctctaggtataaccatcacttcatc |
2024067 |
T |
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| Q |
269 |
ttctttacggttcatcatctctattgctatccttcagattttgattttagacatagaaat |
328 |
Q |
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| T |
2024066 |
ttctttacggttcatcatctctattgctatccttcagattttgattttaaacatagaaat |
2024007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 2024344 - 2024213
Alignment:
| Q |
17 |
tttctgcgtttgaaatcaaactctatacctcagggttagtgagagtgatgaagaaatgtaaagaaaagaaagtgatgttgatatccagagagagtaaaca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
2024344 |
tttctgcgtttgaaatcaaactctatacctcagggttagtgagagtgatgaggaaatgtaaagaaaagaaagtgatggtgatatctagagagagtaaaca |
2024245 |
T |
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| Q |
117 |
ataattaaagctagctgcgaagaaattatatg |
148 |
Q |
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|||| |||||||| |||||||||| |||||| |
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| T |
2024244 |
ctaatcaaagctagttgcgaagaaactatatg |
2024213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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