View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_23 (Length: 342)
Name: NF19841_high_23
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 72 - 327
Target Start/End: Complemental strand, 50337370 - 50337118
Alignment:
| Q |
72 |
tggaagtttttgtgggtcctactttcaccattgacgttccttcatctccgccaccttccaaccagtccgacggtcgccacctcttcttcaccggcggtgt |
171 |
Q |
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| T |
50337370 |
tggaagtttttgtgggtcctactttcaccattgacgttccttcatctccgccaccttccaaccagtccgacggtcgccacctcttcttcaccggcggtgt |
50337271 |
T |
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| Q |
172 |
ttcatcggagccggatagttcatcgtcgatcggaactcctgatgacagtagtgacaacgatgaggaagtacagagcaagttgaacttgaaaggaagaaat |
271 |
Q |
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| T |
50337270 |
ttcatcggagccggagagttcatcgtcgatcggaactcctgatgac---agtgacaacgatgaggaagtacagagcaagttgaacttgaaaggaagaaat |
50337174 |
T |
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| Q |
272 |
gggttgggttcgttggattctttagaagactctctccccatcaagtttgttctttt |
327 |
Q |
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| T |
50337173 |
gggttgggttcgttggattctttagaagactctctccccatcaagtttgttctttt |
50337118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 50337425 - 50337393
Alignment:
| Q |
17 |
aggacaagggtaataaccaaatcactctttacc |
49 |
Q |
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| T |
50337425 |
aggacaagggtagtaaccaaatcactctttacc |
50337393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 74 - 279
Target Start/End: Original strand, 40470781 - 40470998
Alignment:
| Q |
74 |
gaagtttttgtgggtcctactttcaccattgacgttccttcatctccgccaccttccaaccagtccgacggtcgccacctc------------------t |
155 |
Q |
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| T |
40470781 |
gaagtttttgtgggttccactttcaccattgacgttccttcatctccgccaccttccaaccagtccgacggacgtcacctctttttgagaccaccaaagt |
40470880 |
T |
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| Q |
156 |
tcttcaccggcggtgtttcatcggagccggatagttcatcgtcgatcggaactcctgatgacagtagtgacaacgatgaggaagtacagagcaagttgaa |
255 |
Q |
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| T |
40470881 |
ttttcaccggcgg---ttcatcgaagccggaaaattcgtcgtcgatcggaactcctgatgac---cgtgacatcgacaaggaagtgcagagcaagttgaa |
40470974 |
T |
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| Q |
256 |
cttgaaaggaagaaatgggttggg |
279 |
Q |
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|||||||||||||||||||||||| |
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| T |
40470975 |
cttgaaaggaagaaatgggttggg |
40470998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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