View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_24 (Length: 332)
Name: NF19841_high_24
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 46958912 - 46959226
Alignment:
| Q |
3 |
agatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagg |
102 |
Q |
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| T |
46958912 |
agatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtgttgagttttgtgggtgacaaggcggccagaaagagg |
46959011 |
T |
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| Q |
103 |
atagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttg |
202 |
Q |
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| T |
46959012 |
atagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttg |
46959111 |
T |
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| Q |
203 |
aataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggtt |
302 |
Q |
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| T |
46959112 |
aataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggtt |
46959211 |
T |
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| Q |
303 |
tgataaaacattctg |
317 |
Q |
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||||||||||||||| |
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| T |
46959212 |
tgataaaacattctg |
46959226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 46956077 - 46956391
Alignment:
| Q |
3 |
agatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagg |
102 |
Q |
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||||||||||||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46956077 |
agatgaatctagctctggtgttatcgttactgcaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagg |
46956176 |
T |
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| Q |
103 |
atagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttg |
202 |
Q |
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| T |
46956177 |
atagaaatggaaaagagcatgagagaaggagtgtttgagcttctccaatagtttctcgatgaaatcttgttggttatttggtgaaattgttggttttttg |
46956276 |
T |
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| Q |
203 |
aataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggtt |
302 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||| || |||| |||||||||||||||||||||||||||| |
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| T |
46956277 |
aataataggcctttttggatgtagtgcatagatgacatagcaatatcccagcttgttaaataacaactttgttttgaatcttcaatagggtgtagtggtt |
46956376 |
T |
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| Q |
303 |
tgataaaacattctg |
317 |
Q |
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||||||||||||||| |
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| T |
46956377 |
tgataaaacattctg |
46956391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 4 - 317
Target Start/End: Original strand, 46951720 - 46952021
Alignment:
| Q |
4 |
gatgaatctagctccagggttattgttactacaatcaacaaaaatggtataagagggagggtcttgagttttgtgggtgacaaggcggccagaaagagga |
103 |
Q |
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||||||||||||||| | |||||||||||| |||||||| ||||| |||||| |||||||||||| | ||| || || ||||| || || || | |||| |
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| T |
46951720 |
gatgaatctagctccggagttattgttactgcaatcaacgaaaatattataagtgggagggtcttgggatttttgtgtaacaagacgacctgataaagga |
46951819 |
T |
|
| Q |
104 |
tagaaatggaaaagagcatgagagagggagtatttaagcttcttcaatagactctcaatgaaatcttgttgattatttggtgaagttgttggttttttga |
203 |
Q |
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|||||||| || | |||| |||||||||||| ||| || |||| || ||| | | |||||||| |||||| |||||||| ||||||| |
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| T |
46951820 |
tagaaatgaaataaagcaagagagagggagtgtttgagtttctctaaaagattatgaatgaaatgttgttggttatttggc------------tttttga |
46951907 |
T |
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| Q |
204 |
ataataggcctttttggatatagtgcatagatgacatagcaatatcccaacctgttaaataagaaatttgctttgaatcttcaatagggtgtagtggttt |
303 |
Q |
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|||| |||||||| |||||||||| |||||| ||||| |||||||||||| ||| ||||| || |||| ||||| ||| ||| |||||||||||||| |
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| T |
46951908 |
ataagaggcctttctggatatagttcatagaggacatggcaatatcccaagttgtcaaatagcaattttggtttgactctggaatggggtgtagtggttt |
46952007 |
T |
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| Q |
304 |
gataaaacattctg |
317 |
Q |
| |
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|||||||||||||| |
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| T |
46952008 |
gataaaacattctg |
46952021 |
T |
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