View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_33 (Length: 289)
Name: NF19841_high_33
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 38567535 - 38567808
Alignment:
| Q |
15 |
taacataggaacataagaaacataaatgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgt |
114 |
Q |
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| T |
38567535 |
taacctaggaacataagaaacataaatgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgt |
38567634 |
T |
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| Q |
115 |
aattagctactgcttgcttttcaccagtaaaggaagcaacctgaaaatacacacaacatgaggaaggaaattaggctacatgtttatcatagcactgcca |
214 |
Q |
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| T |
38567635 |
aattagctactgcttgcttttcaccagtaaaggaagcaacctgaaaatacacacaacacgaggaaggaagttaggctacatgtttatcatagcactgcca |
38567734 |
T |
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| Q |
215 |
cacataagcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaatttt |
288 |
Q |
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| T |
38567735 |
cacataagcagcaagaaaataaaaagcaacatgtatgtttcgttccactactggactgaggcaaaattaatttt |
38567808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 38526419 - 38526562
Alignment:
| Q |
27 |
ataagaaacataaatgtgcctacacctactccagatataaaaccttcaaaaactcctgatttgtaaccatctacaagatgtttgctgtaattagctactg |
126 |
Q |
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|||| |||||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||| ||| ||| ||||| |
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| T |
38526419 |
ataacaaacataactgtgcctagtcctgctccagctatagtaccttcaaaaactcctgatttgtaagcatctacaagaaatttgctataactagatactg |
38526518 |
T |
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| Q |
127 |
cttgcttttcaccagtaaaggaagcaacctgaaaatacacacaa |
170 |
Q |
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| T |
38526519 |
cttgcttttccccagtaaaggatgcaacctgaaaatatacacaa |
38526562 |
T |
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