View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_35 (Length: 279)
Name: NF19841_high_35
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_35 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 89 - 279
Target Start/End: Complemental strand, 40518143 - 40517953
Alignment:
| Q |
89 |
atattatcatttaatttaatactaaggtttattgattcaaaagtaaaaactagcttgtacataatataaaactcgtctcatttgtacatcatcgaattca |
188 |
Q |
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| T |
40518143 |
atattatcatttaatttaatagtaaggtttattgattcaaaagtaaaaactagcttgtacataatataaaactcgtctcatttgtacatcatcgaattca |
40518044 |
T |
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| Q |
189 |
tcatgtatgcatatataattgcttggcaaatacccctnnnnnnnttgcttggcaaattaattgttaaacctttcagctagttaaaaaggcc |
279 |
Q |
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| T |
40518043 |
tcatgtatgcatatataattgcttggcaaatacccctaaaaaaattgcttgccaaattaattgttaaacctttcagctagttaaaaaggcc |
40517953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 40518282 - 40518203
Alignment:
| Q |
11 |
atgaattgtgaaaaagacataaacgttgaccagagaagtaaactatgtaagcttggtctaacattcataactaaaatgat |
90 |
Q |
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| T |
40518282 |
atgaattgtgaaaaagacataaacgttgaccagagaattaaactatgtaagcttggtctaacattcataactaaaatgat |
40518203 |
T |
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