View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19841_high_37 (Length: 274)

Name: NF19841_high_37
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19841_high_37
NF19841_high_37
[»] chr7 (15 HSPs)
chr7 (18-274)||(24283995-24284251)
chr7 (32-270)||(24232488-24232725)
chr7 (31-235)||(24132459-24132662)
chr7 (31-264)||(24121999-24122231)
chr7 (31-264)||(24151088-24151320)
chr7 (58-264)||(24146097-24146302)
chr7 (32-213)||(24154294-24154474)
chr7 (38-213)||(24161207-24161381)
chr7 (49-213)||(3494849-3495012)
chr7 (58-235)||(24138392-24138568)
chr7 (31-131)||(21194274-21194374)
chr7 (32-146)||(24238059-24238173)
chr7 (70-213)||(21199526-21199668)
chr7 (177-264)||(21194383-21194470)
chr7 (72-146)||(23342854-23342928)
[»] chr2 (2 HSPs)
chr2 (17-240)||(10988794-10989015)
chr2 (65-176)||(28160506-28160617)
[»] chr1 (2 HSPs)
chr1 (31-274)||(3151053-3151294)
chr1 (31-146)||(15380168-15380283)


Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-141; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 24283995 - 24284251
Alignment:
18 gacaaaattacgtttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
24283995 gacaaaattacgtttgagagttatggtggataaagaaagtaacaaagttctatatcctgaagcagtgaaggattttgttgatgtcctcttcagcttcttt 24284094  T
118 accttgcccttagggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24284095 accttgcccttagggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaa 24284194  T
218 gatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagcca 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24284195 gatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgctgctgcagcca 24284251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 32 - 270
Target Start/End: Complemental strand, 24232725 - 24232488
Alignment:
32 tgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagg 131  Q
    ||||| || ||||||| |||||||  ||||||||| | |||||||| || | ||||||||| |||||||  |||||||||||||| || ||||| |||||    
24232725 tgagaattttggtggacaaagaaaagaacaaagttgtgtatgctgaggctgggaaggatttcgttgatgctctcttcagcttcttaacattgcctttagg 24232626  T
132 gactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaaca 231  Q
    ||||||||||||| | || ||||  ||||||||||||||||||| | || |||||||||||||||||| |||||||||||||   | |||||||||||||    
24232625 gactattgcaagatttgtggctaaggactcaaatattgaagcag-tgaaatttggcagcattagctcattgtatcaaagtgtgtcaaatcttgatcaaca 24232527  T
232 atatttatgcacaaatacctgcaaggaaatgctgctgca 270  Q
    |||||| | | ||  ||| |||||||||||||| |||||    
24232526 atatttgtcctcacttacttgcaaggaaatgctactgca 24232488  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 31 - 235
Target Start/End: Complemental strand, 24132662 - 24132459
Alignment:
31 ttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 130  Q
    ||||||||| ||||||| ||| |||  | ||||||| | ||||||||||||| |||||||||||||||||  || ||||||||||| || ||||| ||||    
24132662 ttgagagttttggtggacaaacaaaagagcaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaacattgcctttag 24132563  T
131 ggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaac 230  Q
    | |||||||||||||| || || |  || ||| |||||||||||| | |  |||||||||||||  ||||||||||||||||| | ||||||||||||||    
24132562 gtactattgcaagacttgtggcaaaggagtcagatattgaagcag-tgatatttggcagcattaattcactgtatcaaagtgtgacagatcttgatcaac 24132464  T
231 aatat 235  Q
    |||||    
24132463 aatat 24132459  T

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Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 24122231 - 24121999
Alignment:
31 ttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 130  Q
    |||||||| |||||||| |||||||  ||||||||| | ||||||||||||| |||||||||||||||||  || ||||||||||| ||||| || ||||    
24122231 ttgagagtcatggtggacaaagaaataaacaaagttgtgtatgctgaagcagggaaggattttgttgatgctcttttcagcttcttaaccttaccattag 24122132  T
131 ggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaac 230  Q
    | |||||| ||||||| || ||||  || ||| |||||||||||| | |  ||||||||| | ||  |||| ||||||||||||  |||||||||| |||    
24122131 gtactatttcaagacttgtggctaaggagtcagatattgaagcag-tgagatttggcagcctgagtacactttatcaaagtgtatcagatcttgatgaac 24122033  T
231 aatatttatgcacaaatacctgcaaggaaatgct 264  Q
    | ||| ||||  | ||||||||||| ||||||||    
24122032 actatctatggtccaatacctgcaaagaaatgct 24121999  T

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Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 264
Target Start/End: Complemental strand, 24151320 - 24151088
Alignment:
31 ttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 130  Q
    ||||||||| |||| |||||||| |  |||||||||||||  ||||| || | |||||||||||||||||  |||||||||||||| || || || ||||    
24151320 ttgagagttttggtcgataaagagaaaaacaaagttctattggctgaggctgggaaggattttgttgatgcactcttcagcttcttaacatttcctttag 24151221  T
131 ggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaac 230  Q
    | |||||||| |||||||| |||  ||| |||||||| ||||||||  ||||| || ||  | || ||||| ||||||||||| ||||||||||||| ||    
24151220 gtactattgctagactcgtggctgaagagtcaaatatcgaagcagtgaaattt-ggtagtttgagttcactatatcaaagtgtgaaagatcttgatccac 24151122  T
231 aatatttatgcacaaatacctgcaaggaaatgct 264  Q
    ||||| ||||  || |||||||||| ||||||||    
24151121 aatatctatggtcacatacctgcaaagaaatgct 24151088  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 264
Target Start/End: Complemental strand, 24146302 - 24146097
Alignment:
58 aacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagactcgttgctacag 157  Q
    ||||||||||| | ||| || ||||  ||||||||||||||||| || || ||||||||  | ||||| |||||||| ||||||| |||||| || |  |    
24146302 aacaaagttctgtttgcagaggcaggaaaggattttgttgatgttcttttgagcttcttatcattgcctttagggaccattgcaaaactcgtggcaaagg 24146203  T
158 actcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaagg 257  Q
    |||||||||||||| ||| | || |||||||||||||||||| |||||||||||||   ||||||||||  ||||||| | ||  || | ||||||||||    
24146202 actcaaatattgaatcag-tgaaatttggcagcattagctcattgtatcaaagtgtgtcagatcttgatacacaatatctttggtcacacacctgcaagg 24146104  T
258 aaatgct 264  Q
    |||||||    
24146103 aaatgct 24146097  T

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Target: chr7; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 24154474 - 24154294
Alignment:
32 tgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagg 131  Q
    |||||||| ||||||| ||||  || || |||||| | ||||||||||||| ||||||||| |||||||| || || |||||||| || ||||| |||||    
24154474 tgagagttttggtggacaaagcgaggaaaaaagttgtttatgctgaagcagagaaggatttcgttgatgttctgttaagcttcttaacattgcctttagg 24154375  T
132 gactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgt 213  Q
     |||||||||||||| ||  ||| ||| || ||||||||||||||| |||||    |||||||| |||||||||||||||||    
24154374 tactattgcaagacttgtatctaaagagtcgaatattgaagcagttaaatttaat-agcattagttcactgtatcaaagtgt 24154294  T

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Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 38 - 213
Target Start/End: Complemental strand, 24161381 - 24161207
Alignment:
38 ttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactat 137  Q
    |||||||||| |||||||| || ||||||||||||||||| || |  ||||||||||| ||||| || ||||||||||| || || ||  ||||||||||    
24161381 ttatggtggacaaagaaaggaagaaagttctatatgctgaggctggaaaggattttgtcgatgttcttttcagcttcttgacattacctctagggactat 24161282  T
138 tgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgt 213  Q
    |||  ||||| |  ||| ||| |||||||| ||||||| | |  |||||||||||||| |||||||| | ||||||    
24161281 tgcttgactcatatctaaagagtcaaatatggaagcag-tgaggtttggcagcattagttcactgtacctaagtgt 24161207  T

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Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 3495012 - 3494849
Alignment:
49 aaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagactcg 148  Q
    |||||||| || | |||||| ||||||||||| |  |||||||| || ||||| ||||| || ||||| || |||||  |||| |||||||||||| | |    
3495012 aaagaaagaaatagagttctgtatgctgaagccggtaaggatttcgtcgatgttctctttagtttcttaacattgcctctaggtactattgcaagattag 3494913  T
149 ttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgt 213  Q
    || |||  || |||||||||||||||| | || ||||| |||||||||||||| |||||||||||    
3494912 tttctaaggattcaaatattgaagcag-tgaaatttggtagcattagctcactatatcaaagtgt 3494849  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 235
Target Start/End: Complemental strand, 24138568 - 24138392
Alignment:
58 aacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagactcgttgctacag 157  Q
    ||||||||||| | | |||| ||||  ||||||||||||||||| || || || ||||| || || |||||||| ||||| ||| || |||| | || ||    
24138568 aacaaagttctgtttactgaggcagataaggattttgttgatgttcttttgagtttcttaacattacccttaggtactatcgcaggaatcgtggataaag 24138469  T
158 actcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatat 235  Q
    | |||||||||||||||| | |  ||||||||||| || ||||| |||||||||||   || ||||||||||||||||    
24138468 agtcaaatattgaagcag-tgagatttggcagcataagttcactctatcaaagtgtgtcagttcttgatcaacaatat 24138392  T

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Target: chr7; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 21194274 - 21194374
Alignment:
31 ttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 130  Q
    ||||| ||||||||||| |||||||| ||||||||| | |||||||| |||| |||||||||| |||| || || ||||||||||| || ||||| ||||    
21194274 ttgagggttatggtggacaaagaaaggaacaaagttttgtatgctgaggcagggaaggattttattgaagttctattcagcttcttaacattgcctttag 21194373  T
131 g 131  Q
    |    
21194374 g 21194374  T

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Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 24238059 - 24238173
Alignment:
32 tgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagg 131  Q
    ||||||||||||||||   | |||| ||||||||| | |||||||| ||||  ||||||||||| ||||  |||||||| ||||| || ||||| |||||    
24238059 tgagagttatggtggacggaaaaaggaacaaagttgtgtatgctgaggcaggcaaggattttgtcgatgctctcttcagtttcttaacattgcctttagg 24238158  T
132 gactattgcaagact 146  Q
     ||||||||||||||    
24238159 aactattgcaagact 24238173  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 213
Target Start/End: Original strand, 21199526 - 21199668
Alignment:
70 tatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagactcgttgctacagactcaaatattg 169  Q
    |||||||| ||||  ||||||||||||||||  |||||| ||||||| || ||||| ||||| |||||||||||||| ||  |    || || |||||||    
21199526 tatgctgaggcaggaaaggattttgttgatgctctcttcggcttcttaacattgcctttaggaactattgcaagactagtgtccgaggagtcgaatattg 21199625  T
170 aagcagttcaattttggcagcattagctcactgtatcaaagtgt 213  Q
    ||||   | || |||||||||||||||||||||||||| |||||    
21199626 aagc-tatgaaatttggcagcattagctcactgtatcagagtgt 21199668  T

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Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 21194383 - 21194470
Alignment:
177 tcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaacaatatttatgcacaaatacctgcaaggaaatgct 264  Q
    |||| |||||||||||||||||||| |||||||||||   | |||||||| |||||||| |||| ||   ||| ||||||||||||||    
21194383 tcaaatttggcagcattagctcactatatcaaagtgtggcaaatcttgatgaacaatatctatggactcgtacttgcaaggaaatgct 21194470  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 23342928 - 23342854
Alignment:
72 tgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagact 146  Q
    |||||||||||  ||||| ||||| ||||| || || |||||||| || ||||| ||||| ||||||||||||||    
23342928 tgctgaagcaggaaaggactttgtggatgttctgtttagcttcttaacattgcctttaggaactattgcaagact 23342854  T

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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 10988794 - 10989015
Alignment:
17 tgacaaaattacgtttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctt 116  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||    
10988794 tgacaaaattacgtt-gagagttaaggtggataaagaaagtaacaaagttctgtatgctgaggcagtgaaggatttcgttgatgttctcttcagcttctt 10988892  T
117 taccttgcccttagggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaa 216  Q
     || ||||| |||||||||||||| ||||| || |||||||| ||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||| ||    
10988893 aacattgcctttagggactattgcgagacttgtggctacagagtcaaatattgaagcagttcaa-tttggtagcattagttcactatatcaaagtgtgaa 10988991  T
217 agatcttgatcaacaatatttatg 240  Q
    |||||||||||| |||||||||||    
10988992 agatcttgatcagcaatatttatg 10989015  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 28160506 - 28160617
Alignment:
65 ttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttagggactattgcaagactcgttgctacagactcaaa 164  Q
    |||| ||||||||||||| |||||||||||||| ||  || ||||||||||| ||||| |  ||||| |||||| | ||||| || ||||  || ||| |    
28160506 ttctgtatgctgaagcagggaaggattttgttggtgctcttttcagcttcttaaccttactgttaggtactatttctagacttgtggctaaggagtcaga 28160605  T
165 tattgaagcagt 176  Q
    |||||| |||||    
28160606 tattgacgcagt 28160617  T

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Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 274
Target Start/End: Original strand, 3151053 - 3151294
Alignment:
31 ttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 130  Q
    |||||| |||||||||| |||||||| ||||| |||||||||||||| || | ||||||||| || ||||| || || || || || || || ||  |||    
3151053 ttgagaattatggtggacaaagaaaggaacaa-gttctatatgctgaggctgggaaggatttcgtcgatgttcttttgagttttttaacattacctctag 3151151  T
131 ggactattgcaagactcgttgctacagactcaaatattgaagcagttcaattttggcagcattagctcactgtatcaaagtgtaaaagatcttgatcaac 230  Q
    ||||||||||||||||| || ||   || |||||||||||||||||  || || |||||||| |||||| |||||| | |||||   |||||||||||||    
3151152 ggactattgcaagactcatttctcaggagtcaaatattgaagcagtgaaactt-ggcagcataagctcattgtatcgaggtgtatcggatcttgatcaac 3151250  T
231 aatatttatgcacaaatacctgcaaggaaatgctgctgcagcca 274  Q
    ||||| ||||  || |  | ||||| ||||||||||||||||||    
3151251 aatatctatggtcacaggcatgcaaagaaatgctgctgcagcca 3151294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 15380168 - 15380283
Alignment:
31 ttgagagttatggtggataaagaaagtaacaaagttctatatgctgaagcagtgaaggattttgttgatgtcctcttcagcttctttaccttgcccttag 130  Q
    |||||| |||||||||||| |||||| ||||||||||||||||  || |||| ||||||||||||||||   || ||||||||||| |  || || ||||    
15380168 ttgagatttatggtggatagagaaaggaacaaagttctatatgtagaggcagggaaggattttgttgatactcttttcagcttcttaatatttcctttag 15380267  T
131 ggactattgcaagact 146  Q
    ||||||||||||||||    
15380268 ggactattgcaagact 15380283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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