View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_57 (Length: 206)
Name: NF19841_high_57
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_57 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 37341038 - 37341209
Alignment:
| Q |
35 |
ggattatgaataccactgaaagtaataccataaatcaaagatccatgttgtgtgagttcatgttaattctaaatctatctttgaaaataatgttgatttt |
134 |
Q |
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| T |
37341038 |
ggattatgaataccactgaaagaaataccataaatcaaagatccatgttgtgtgagtgcatgttaattctaaatctatctttgaaaataatgttgatttt |
37341137 |
T |
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| Q |
135 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaat |
206 |
Q |
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| T |
37341138 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaat |
37341209 |
T |
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Target: chr2 (Bit Score: 164; Significance: 7e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 25889475 - 25889646
Alignment:
| Q |
35 |
ggattatgaataccactgaaagtaataccataaatcaaagatccatgttgtgtgagttcatgttaattctaaatctatctttgaaaataatgttgatttt |
134 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889475 |
ggattatgaataccactgaaagaaataccataaatcaaagatccatgttgtgtgagtgcatgttaattctaaatctatctttgaaaataatgttgatttt |
25889574 |
T |
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| Q |
135 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25889575 |
agaaaactggaaaacttgactttagttaaattagtcattgaaaaacaacagtactcattatagagacaaaat |
25889646 |
T |
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