View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_high_9 (Length: 516)
Name: NF19841_high_9
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 93 - 503
Target Start/End: Complemental strand, 32084215 - 32083805
Alignment:
| Q |
93 |
tggatcttctcctccttgaaaagacccttttagccctcttcattgccgccacaatcgccatcacaatctcaaaactccgtggcaaacgcttcaaactccc |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084215 |
tggatcttctcctccttgaaaagacccttttagccctcttcattgccgccacaatcgccatcacaatctcaaaactccgtggcaaacgcttcaaactccc |
32084116 |
T |
|
| Q |
193 |
accaggtccaatcccagtccctatcttcggtaactggcttcaagtcggagatgatctcaaccaccgtaacctcaccgattacgccaaacgcttcggcgaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084115 |
accaggtccaatcccagtccctatcttcggtaactggcttcaagtcggagatgatctcaaccaccgtaacctcaccgattacgccaaacgcttcggcgaa |
32084016 |
T |
|
| Q |
293 |
atgttcctcctacgtatgggccaacgtaacctcgtggtagtttcttccccagaactcgccaaagaagtcctccacacacaaggtgttgaattcggatcac |
392 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32084015 |
atgttcctcctacgtatgggccaacgtaacctcgtggtagtttcttccccagaactcgccaaagaagtcctccacacacaaggtgttgaattcggatcac |
32083916 |
T |
|
| Q |
393 |
gtacacgtaacgtagttttcgatatcttcacaggtaaaggacaagacatggtgttcacagtctacggcgaacattggcgtaaaatgcgcagaatcatgac |
492 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32083915 |
gtacacgtaacgtagttttcgatatcttcactggtaaaggacaagacatggtgttcacagtctacggcgaacattggcgtaaaatgcgcagaatcatgac |
32083816 |
T |
|
| Q |
493 |
agttccgtttt |
503 |
Q |
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||||||||||| |
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| T |
32083815 |
agttccgtttt |
32083805 |
T |
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Back To:
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Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 93 - 280
Target Start/End: Original strand, 16117614 - 16117813
Alignment:
| Q |
93 |
tggatcttctcctccttgaaaagacccttttagccctcttcattgccgccacaatcgccatcacaatctcaaaactccgtggcaaacgcttcaaactccc |
192 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||| |||||||| | | |||||||| ||||||||||||| |
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| T |
16117614 |
tggaccttctcctccttcgaaagacccttttagccctcttcatcgccgccacaatagccatcataatctcaataatttgtggcaaaagcttcaaactccc |
16117713 |
T |
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| Q |
193 |
accaggtccaatcccagtccc------------tatcttcggtaactggcttcaagtcggagatgatctcaaccaccgtaacctcaccgattacgccaaa |
280 |
Q |
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|||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
16117714 |
accaggtccattcccagtccctatatatatatatatcttcggtaacttgcttcaagtcggagatgatctcaaccaccgtaatctcaccaattacgccaaa |
16117813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 493
Target Start/End: Original strand, 50240387 - 50240511
Alignment:
| Q |
369 |
cacaaggtgttgaattcggatcacgtacacgtaacgtagttttcgatatcttcacaggtaaaggacaagacatggtgttcacagtctacggcgaacattg |
468 |
Q |
| |
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|||||||||| || || || || ||| | |||||||| || || || |||||||| ||||| |||||||||||||| ||||| ||||| || || ||||| |
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| T |
50240387 |
cacaaggtgtcgagtttggttctcgtcctcgtaacgttgtctttgacatcttcactggtaatggacaagacatggttttcactgtctatggtgatcattg |
50240486 |
T |
|
| Q |
469 |
gcgtaaaatgcgcagaatcatgaca |
493 |
Q |
| |
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||| |||||||| |||||||||||| |
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| T |
50240487 |
gcgcaaaatgcgaagaatcatgaca |
50240511 |
T |
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