View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_1 (Length: 769)
Name: NF19841_low_1
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 459; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 260 - 758
Target Start/End: Complemental strand, 3239275 - 3238779
Alignment:
| Q |
260 |
ctcgatataggatgtgcatttaactttagataagatttgtggatgatacaaaacccatatggtgttttataccaaaaatgtaaaactaattgttattatg |
359 |
Q |
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| T |
3239275 |
ctcgatataggatgtgtatttac--ttagataagatttgtggatgatacaaaacccatatggtgttttataccaaaaatgtaaaactaattgttattatg |
3239178 |
T |
|
| Q |
360 |
aaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaattaaa |
459 |
Q |
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| T |
3239177 |
aaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacatatcttctccaccctttaggaaaattaaa |
3239078 |
T |
|
| Q |
460 |
attgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctgnnnnnnntatcgaaaaca |
559 |
Q |
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| T |
3239077 |
attgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcataacaatccgcctgaaaaaaatatcgaaaaca |
3238978 |
T |
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| Q |
560 |
tacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaactttctgagtacg |
659 |
Q |
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| T |
3238977 |
tacaaaaattgagcacatgacaatgatgatatgtgtatgtagtaaattggaatttactcagagcatgaatagcctttgaggaagaaactttctgagtacg |
3238878 |
T |
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| Q |
660 |
tcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttactgtttcagtgatgat |
758 |
Q |
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| T |
3238877 |
tcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctggggatttcttctcaattgctttactgtttcagtgatgat |
3238779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 333 - 541
Target Start/End: Complemental strand, 3243348 - 3243141
Alignment:
| Q |
333 |
aaaaatgtaaaactaattgttattatgaaacataccttttgcaattgttagcaaggcactgaattgatttgtaagagccaactcaagatttacatacata |
432 |
Q |
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| T |
3243348 |
aaaaatgtaaaagcaattgttaatatgaaacatacctttgacaattgtgagcaaggcattggcttgattagtaagagccaactcaagattta----cata |
3243253 |
T |
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| Q |
433 |
tcttctccaccctttaggaaaat---taaaattgtcaacattcaaataaattgacaatgacaagtaacctgggttgttcttgctcccttttggattcata |
529 |
Q |
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| T |
3243252 |
tcttttccagtctttagaaaaatcagtaatatcagcaacaaccgaaagaattgataatgacaagtaaccagagttgttctcgttcccttttggattcata |
3243153 |
T |
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| Q |
530 |
acaatccgcctg |
541 |
Q |
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| T |
3243152 |
acaatccgcctg |
3243141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 650 - 723
Target Start/End: Complemental strand, 3243022 - 3242949
Alignment:
| Q |
650 |
tctgagtacgtcttagaatcacatttggagaagttattaatcgtccatgtgaattgctcaatcgtccctgggga |
723 |
Q |
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| T |
3243022 |
tctgagtacatctgagaatcacacttagagaagttcttaatcgtccatgtgaattgctcaatcgtccatgggga |
3242949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 3243571 - 3243501
Alignment:
| Q |
18 |
catccaaatgtacgaacttgtcgacactccaataataattactttctttgaactcctgttcggtttctgat |
88 |
Q |
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| T |
3243571 |
catccaaatgtatgaacttgtcgacactccagcaataattacttgcattgagctcctgttcagtttctgat |
3243501 |
T |
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