View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19841_low_11 (Length: 486)
Name: NF19841_low_11
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 201 - 364
Target Start/End: Original strand, 3026456 - 3026619
Alignment:
| Q |
201 |
tctacatacccagcataatgcttggaaggtattgttccattgaaaccaggaagctgtgttacaatggcagtttcaggtgctgaaattgtcagcacaatgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3026456 |
tctacatacccagcataatgcttggaaggtattgttccattgaaaccaggaacctgtgttacaatggcagtttcaggtgctgaaattgtcagcacaatgc |
3026555 |
T |
|
| Q |
301 |
tgaggtaaatctgaagtaagaccaaacagacagtgctacgtgttttgttcatccttgtttgttc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3026556 |
tgaggtaaatctgaagtaagaccaaacagacagtgctacgtgttttgttcatccttgtttgttc |
3026619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 3026266 - 3026371
Alignment:
| Q |
13 |
aaaatagtaatacaaattccttccatgactttcatccacagtcacataccttcattcaagggtcaattaatcaaaacataacataatgcatttcttcaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3026266 |
aaaatagtaatacaaattccttccatgactttcatccacagtcacataccttcattcaagggtcaattaatcaaaacataacataatgcgtttcttcaaa |
3026365 |
T |
|
| Q |
113 |
taagtc |
118 |
Q |
| |
|
|||||| |
|
|
| T |
3026366 |
taagtc |
3026371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 417 - 473
Target Start/End: Original strand, 3026672 - 3026728
Alignment:
| Q |
417 |
ggttgaagttaaatttatagagtaatctaagaaaagagtgatgatgggtccactttg |
473 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3026672 |
ggttgaagttaaatttatagagtaatctaagaaaagagtgatgatgggtccactttg |
3026728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University