View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_12 (Length: 484)
Name: NF19841_low_12
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 67 - 466
Target Start/End: Complemental strand, 40517840 - 40517441
Alignment:
| Q |
67 |
ggttttgacgcaaatgggttcacatatatcttaatacttgtatttggtctcgtattcttggttctttcaatagttattgcatgtgttcgacttcgtagtt |
166 |
Q |
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| T |
40517840 |
ggttttgacgcaaatgggttcacatatatcttaatacttgtatttggtctcgtattcttggttctttcaatagttattgcatgtgttcgacttcgtagtt |
40517741 |
T |
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| Q |
167 |
cacgaagtcgaaacattctcaatattttgtctggttttccaccacatcgtcatgaagactcaatcatggaacaaggacttcgtcatcacaccgacacaag |
266 |
Q |
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| T |
40517740 |
cacgaagtcgaaacattctcaatattttgtccggttttccaccacatcgtcatgaagactcaatcatggaacaaggacttcgtcatcacaccgacacaag |
40517641 |
T |
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| Q |
267 |
ttttgaaggatacccgaaactgttatactctcaaattcagaagaatggttcttcaacttcaattagttgctctatttgcttaggagattataaagaaagt |
366 |
Q |
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| T |
40517640 |
ttttgaaggatacccgaaactgttatactctcaaattcagaagaatggttcttcaacttcaattagttgctctatttgcttaggagattataaagaaagt |
40517541 |
T |
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| Q |
367 |
gacatgttgaggttacttccagattgtggtcatctttatcatgttgcttgtgttgatccatggctcgtgttacattccacttgtcccatatgtagaaaat |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40517540 |
gacatgttgaggttacttccagattgtggtcatctttatcatgttgcttgtgttgatccatggctcgtgttacattccacttgtcccatatgtagaaaat |
40517441 |
T |
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