View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_13 (Length: 475)
Name: NF19841_low_13
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_13 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 28 - 460
Target Start/End: Complemental strand, 14132352 - 14131916
Alignment:
| Q |
28 |
ccagctgtgaggaacccgcaggcagaaatttctgctcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcccacagatg |
127 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||| |||||| ||| |||| |
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| T |
14132352 |
ccagctgtgaggaacccgcaagcagaaatttctgctcataacagtccagatatgacagttagcttg-agcacggaaggaattcttctattctcacggatg |
14132254 |
T |
|
| Q |
128 |
tagcagcaggtgcgggcagttccagcactggacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccgatca |
227 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14132253 |
tagcagcaggtgcgggcagttccagcactgc-cagtctcgctggcatccaccgtcgcgaggtagagtgaagtgtaatatagatgcagccttctccaatca |
14132155 |
T |
|
| Q |
228 |
attcaacaagacgggcattggtatatgcatccgagatgaggagggtacttttattttggctcaatcaatccctatttccccaa-------agtggtaatg |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14132154 |
attcaacaagacgggcattggtatatgcatccgagatgaggagggcacatttattttggctcaatcaatccctatttccccaaggtgtccagtggtaatg |
14132055 |
T |
|
| Q |
321 |
ggagaagtgttggctttgtataaagcaatagaatggttaagtgacatggcctttgattcggtggatttttgtttagactccaaaactattacggatgctt |
420 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14132054 |
ggagaagcattggctttgtataaagcaatagaatggttaagtgacatggcctttgattcggtggatttttgttctgactccaaaactattacggatgctt |
14131955 |
T |
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| Q |
421 |
ttaatcagaattgggtagatgtcacggagactggttatat |
460 |
Q |
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| T |
14131954 |
ttaatcagaact-ggtagatgtcacggagactggttatat |
14131916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 460
Target Start/End: Complemental strand, 267620 - 267171
Alignment:
| Q |
20 |
actactctccagctgtgaggaacccgcaggcagaaatttct--gctcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctatt |
117 |
Q |
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||||||| |||||||||||||||||||| ||| ||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
267620 |
actactccccagctgtgaggaacccgcaagcaattttttttttgctcataatagttcaggtatgacagttagcttggagcagggaaggaattctactatt |
267521 |
T |
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| Q |
118 |
cccacagatgtagcagcaggtgcgggcagttccagcactggacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcagcct |
217 |
Q |
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| T |
267520 |
cccacggatgtagcagcaggtgcgggcagttccagcactagacagtctcgctggcagccaccgtcgcgaggtagagtgaagtgtaatatagatgcaacct |
267421 |
T |
|
| Q |
218 |
tctccgatcaattcaacaagacgggcattggtatatgcatccgagatgaggagggtacttttattttggctcaatcaatccctatttccccaa------- |
310 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
267420 |
tctgagatcaattcaacaagacgggcattggtatatgcatccgagatgaggagggtacttttattttggctcaatcaatccctatttccccaaagtgtcc |
267321 |
T |
|
| Q |
311 |
agtggtaatgggagaagtgttggctttgtataaagcaatagaatggttaagtgacatggcctttgattcggtggatttttgtttagactccaaaactatt |
410 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
267320 |
agtggtaatgggagaagctttggctttgtataaagcaatagaatggttaagtgacatggcgtttgattcggtggatttttgttatgactccaaaactatt |
267221 |
T |
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| Q |
411 |
acggatgcttttaatcagaattgggtagatgtcacggagactggttatat |
460 |
Q |
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|| |||||||||||||||| |||||||||||| | |||||||||||||| |
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| T |
267220 |
acagatgcttttaatcagacctgggtagatgtctcagagactggttatat |
267171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 12299 - 12149
Alignment:
| Q |
20 |
actactctccagctgtgaggaacccgcaggcagaaatttctgctcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcc |
119 |
Q |
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||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12299 |
actactccccagctgtgaggaacccgcaggcaaaaatttctactcataacagttcaggtatgacagttagcttggagcagggaaggaattctgctattcc |
12200 |
T |
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| Q |
120 |
cacagatgtagcagcaggtgcgggcagttccagcactggacagtctcgctg |
170 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12199 |
cacggatgtagcagcaggtgtgggcagttccagcactggacagtctcgctg |
12149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 343 - 460
Target Start/End: Complemental strand, 27918657 - 27918541
Alignment:
| Q |
343 |
aagcaatagaatggttaagtgacatggcctttgattcggtggatttttgtttagactccaaaactattacggatgcttttaatcagaattgggtagatgt |
442 |
Q |
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||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||||| | |||| ||||||||| |||||||| ||||| ||| |
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| T |
27918657 |
aagcaatagaatggttaagcgacatgtcctttgattcgatggatttttgttctgactccaaacccattatagatgctttt-atcagaatcaggtaggtgt |
27918559 |
T |
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| Q |
443 |
cacggagactggttatat |
460 |
Q |
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| T |
27918558 |
cacggagactggttatat |
27918541 |
T |
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