View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_15 (Length: 435)
Name: NF19841_low_15
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 160 - 382
Target Start/End: Original strand, 7329268 - 7329492
Alignment:
| Q |
160 |
tcaaagattgaaaacatcaattgtttgaaggtttgatgacttatgttgaagatttaatttttacacgctgataaaataaaactttactacacaaccattc |
259 |
Q |
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| T |
7329268 |
tcaaagattgaaaacatcaattgtttgaaggtttgatgacttatgttgaagatttaatttttacacgctgataaaataaaactttactacacaaccattc |
7329367 |
T |
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| Q |
260 |
aatcaagtccaca--atatatagatatttgttgaataacctaaaaaagtgaacctataatatgattatattctatctatacatgtataaaaaagtttgca |
357 |
Q |
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| T |
7329368 |
aatcaagtccacaatatatatagatatttgttgaataacctaaaaaagtgaacctataatatgattatattctatctatacatgtataaaaaagtttgca |
7329467 |
T |
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| Q |
358 |
tagtcattacatagaaattaatcga |
382 |
Q |
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| T |
7329468 |
tagtcattacatagaaattaatcga |
7329492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 7329143 - 7329187
Alignment:
| Q |
39 |
tcaaagaatcttcattgtttggattatgaaagaatatggaaatcc |
83 |
Q |
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| T |
7329143 |
tcaaagaatcttcgttctttggattatgaaagaatatggaaatcc |
7329187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 7329510 - 7329546
Alignment:
| Q |
399 |
catagaggaccttgaataaaatgatagggaagaggtc |
435 |
Q |
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| T |
7329510 |
catagaggaccttgaataaaatgatagggaagaggtc |
7329546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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