View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19841_low_21 (Length: 347)

Name: NF19841_low_21
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19841_low_21
NF19841_low_21
[»] chr7 (3 HSPs)
chr7 (1-104)||(41872195-41872298)
chr7 (137-179)||(41872042-41872084)
chr7 (262-329)||(20000673-20000741)
[»] chr8 (7 HSPs)
chr8 (263-328)||(17061493-17061558)
chr8 (263-328)||(17221107-17221172)
chr8 (263-328)||(17586800-17586865)
chr8 (274-328)||(17221215-17221269)
chr8 (263-329)||(42433701-42433767)
chr8 (3-47)||(4645880-4645924)
chr8 (261-308)||(41451103-41451151)
[»] chr1 (2 HSPs)
chr1 (263-328)||(19841486-19841551)
chr1 (263-328)||(37221016-37221081)
[»] chr4 (2 HSPs)
chr4 (262-328)||(14497005-14497071)
chr4 (263-309)||(812736-812782)
[»] chr2 (2 HSPs)
chr2 (263-324)||(21177650-21177711)
chr2 (263-328)||(44352679-44352744)
[»] chr6 (3 HSPs)
chr6 (262-328)||(28116827-28116893)
chr6 (263-328)||(16599809-16599874)
chr6 (263-328)||(22042300-22042365)
[»] chr5 (1 HSPs)
chr5 (263-328)||(16224219-16224284)
[»] scaffold0526 (1 HSPs)
scaffold0526 (263-328)||(10455-10520)
[»] scaffold0023 (2 HSPs)
scaffold0023 (263-328)||(130466-130531)
scaffold0023 (263-328)||(134560-134625)
[»] chr3 (4 HSPs)
chr3 (263-328)||(8054713-8054778)
chr3 (277-309)||(8062603-8062635)
chr3 (277-309)||(11970040-11970072)
chr3 (277-309)||(11983896-11983928)
[»] scaffold1281 (1 HSPs)
scaffold1281 (262-310)||(1912-1960)
[»] scaffold0661 (1 HSPs)
scaffold0661 (263-320)||(963-1020)
[»] scaffold0208 (1 HSPs)
scaffold0208 (277-309)||(14122-14154)
[»] scaffold0036 (1 HSPs)
scaffold0036 (277-309)||(109657-109689)


Alignment Details
Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 41872298 - 41872195
Alignment:
Q  1 gctggaggaagaaggatacagaatcattggaaacataggagaccaattggaaccaacacaggcaataggacttttaagctccctgatccaatgtactaca 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41872298 gctggaggaagaaggatacaaaatcattggaaacataggagaccacttggaaccaacacaggcaataggacttttaagctccctgatccaatgtactaca 41872199  T
Q  101 ttac 104  Q
    ||||    
T  41872198 ttac 41872195  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 41872084 - 41872042
Alignment:
Q  137 atgctgtaatgattagctaactaattaccgaatggatattact 179  Q
    |||||||||| |||||||| ||| |||||||||||||||||||    
T  41872084 atgctgtaataattagctagctacttaccgaatggatattact 41872042  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 329
Target Start/End: Complemental strand, 20000741 - 20000673
Alignment:
Q  262 aggcaaaagttatggtgcataagcca-taacttatgcaccatgcataaggtcttcacagccatcagatt 329  Q
    ||||||||||||||||||||||| || | ||||||||||| |||||||   | ||||| ||||||||||    
T  20000741 aggcaaaagttatggtgcataagtcatttacttatgcaccgtgcataaacacatcacaaccatcagatt 20000673  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 17061558 - 17061493
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17061558 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 17061493  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 17221107 - 17221172
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17221107 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 17221172  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 17586800 - 17586865
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17586800 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 17586865  T

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Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 274 - 328
Target Start/End: Original strand, 17221215 - 17221269
Alignment:
Q  274 tggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17221215 tggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 17221269  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 263 - 329
Target Start/End: Original strand, 42433701 - 42433767
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagatt 329  Q
    ||||||||||||||||||||||  |   |||||||||| ||||||||  ||||||| ||||||||||    
T  42433701 ggcaaaagttatggtgcataaggaaatccttatgcaccgtgcataagcacttcacaaccatcagatt 42433767  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 4645924 - 4645880
Alignment:
Q  3 tggaggaagaaggatacagaatcattggaaacataggagaccaat 47  Q
    ||||||||||||||||||||||  |||||||||| ||||| ||||    
T  4645924 tggaggaagaaggatacagaattgttggaaacattggagatcaat 4645880  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 41451103 - 41451151
Alignment:
Q  261 taggcaaaagttatggtgcataagcca-taacttatgcaccatgcataa 308  Q
    ||||||||||||||||||||||||||| |  |||||||||| |||||||    
T  41451103 taggcaaaagttatggtgcataagccatttccttatgcaccgtgcataa 41451151  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 19841486 - 19841551
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19841486 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 19841551  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 37221016 - 37221081
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||  || |||||||||    
T  37221016 ggcaaaagttatggtgcataaaccataacttatgcaccatgcataaggacttgtcaaccatcagat 37221081  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 14497005 - 14497071
Alignment:
Q  262 aggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14497005 aggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacaaccatcagat 14497071  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 263 - 309
Target Start/End: Complemental strand, 812782 - 812736
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataag 309  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  812782 ggcaaaagttatggtgcataatccataacttatgcaccatgcataag 812736  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 21177711 - 21177650
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatc 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21177711 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatc 21177650  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 44352744 - 44352679
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||    
T  44352744 ggcaaaagttatggtgcataagccataacttatgcaccatgcataagttaatcacaaccatcagat 44352679  T

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Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 262 - 328
Target Start/End: Original strand, 28116827 - 28116893
Alignment:
Q  262 aggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  28116827 aggcaaaagttatggtgcataagccataacttatgcaccatgcataagatcttcacaaccatcagat 28116893  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 16599809 - 16599874
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||||    
T  16599809 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggacttgtcaaccatcagat 16599874  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 22042365 - 22042300
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||    
T  22042365 ggcaaaagttatggtgcataagccataacttatgcaccatgcataagttaatcacaaccatcagat 22042300  T

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Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 16224284 - 16224219
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||    
T  16224284 ggcaaaagttatggtgcataagccataacttatgcaccatgaataaggtgttcacaaccatcagat 16224219  T

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Target: scaffold0526 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 10455 - 10520
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||||    
T  10455 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggacttgtcaaccatcagat 10520  T

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Target: scaffold0023 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 130531 - 130466
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||    
T  130531 ggcaaaagttatggtgcataagccataacttatgcaccatgcataagttaatcacaaccatcagat 130466  T

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Target: scaffold0023; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 134625 - 134560
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||    
T  134625 ggcaaaagttatggtgcataagccataacttatgcaccatgcataagttaatcacaaccatcagat 134560  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 8054713 - 8054778
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagccatcagat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |  ||||| |||||||||    
T  8054713 ggcaaaagttatggtgcataagccataacttatgcaccatgcataagttaatcacaaccatcagat 8054778  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 8062635 - 8062603
Alignment:
Q  277 tgcataagccataacttatgcaccatgcataag 309  Q
    |||||||||||||||||||||||||||||||||    
T  8062635 tgcataagccataacttatgcaccatgcataag 8062603  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 11970040 - 11970072
Alignment:
Q  277 tgcataagccataacttatgcaccatgcataag 309  Q
    |||||||||||||||||||||||||||||||||    
T  11970040 tgcataagccataacttatgcaccatgcataag 11970072  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 11983928 - 11983896
Alignment:
Q  277 tgcataagccataacttatgcaccatgcataag 309  Q
    |||||||||||||||||||||||||||||||||    
T  11983928 tgcataagccataacttatgcaccatgcataag 11983896  T

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Target: scaffold1281 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold1281
Description:

Target: scaffold1281; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 1960 - 1912
Alignment:
Q  262 aggcaaaagttatggtgcataagccataacttatgcaccatgcataagg 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1960 aggcaaaagttatggtgcataagccataacttatgcaccatgcataagg 1912  T

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Target: scaffold0661 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0661
Description:

Target: scaffold0661; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 263 - 320
Target Start/End: Original strand, 963 - 1020
Alignment:
Q  263 ggcaaaagttatggtgcataagccataacttatgcaccatgcataaggtcttcacagc 320  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  963 ggcaaaaattatggtgcataagccataacttatgtaccatgcataaggtctttacagc 1020  T

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Target: scaffold0208 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 14122 - 14154
Alignment:
Q  277 tgcataagccataacttatgcaccatgcataag 309  Q
    |||||||||||||||||||||||||||||||||    
T  14122 tgcataagccataacttatgcaccatgcataag 14154  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 109689 - 109657
Alignment:
Q  277 tgcataagccataacttatgcaccatgcataag 309  Q
    |||||||||||||||||||||||||||||||||    
T  109689 tgcataagccataacttatgcaccatgcataag 109657  T

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