View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_26 (Length: 319)
Name: NF19841_low_26
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_26 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 5353 - 5655
Alignment:
| Q |
17 |
acttggaacgttgaattcttcggtccagaagatgtgaaacgattgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgacgaaa |
116 |
Q |
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| T |
5353 |
acttggaacgttgaattcttcggtccagaagatgtgaaacggttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgacgaaa |
5452 |
T |
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| Q |
117 |
aaactccattcaatcctgctgaggataatatatggacggagaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaagtggcagaag |
216 |
Q |
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| T |
5453 |
aaactccattcaatcctgctgaggataatatatggacggagaaagctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaagtggcagaag |
5552 |
T |
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| Q |
217 |
tataattgatggtattgacatcaattatgagcacatcctcacaagtgttgataaagatcgatgtcgtttcgcggagtgcttagggcaagttataacagat |
316 |
Q |
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| T |
5553 |
tataattgatggtattgacatcaattatgagcacatcctcacaagtgttgataaagatcgatgtcgtttcgcggagtgcttagggcaagttataacagat |
5652 |
T |
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| Q |
317 |
ctc |
319 |
Q |
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| T |
5653 |
ctc |
5655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 15723 - 15873
Alignment:
| Q |
59 |
ttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacgg |
155 |
Q |
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| T |
15723 |
ttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggatta |
15822 |
T |
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| Q |
156 |
agaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
206 |
Q |
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| T |
15823 |
cgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
15873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 25891 - 26041
Alignment:
| Q |
59 |
ttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacgg |
155 |
Q |
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| T |
25891 |
ttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggatta |
25990 |
T |
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| Q |
156 |
agaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
206 |
Q |
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| T |
25991 |
cgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
26041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 206
Target Start/End: Original strand, 36057 - 36207
Alignment:
| Q |
59 |
ttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtga---cgaaaaaactccattcaatcctgctgaggataatatatggacgg |
155 |
Q |
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||||||| ||||||| |||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||| |||||| | ||| |||| |
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| T |
36057 |
ttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggatta |
36156 |
T |
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| Q |
156 |
agaaagctgtggcttcactcaaaacgatcatcctaagattcaaggatcaaa |
206 |
Q |
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| T |
36157 |
cgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaa |
36207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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