View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_28 (Length: 315)
Name: NF19841_low_28
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 32 - 298
Target Start/End: Complemental strand, 38341488 - 38341205
Alignment:
| Q |
32 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctcggcgaagaaaaagatgtggtaaacttatcaggcaattt |
131 |
Q |
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| T |
38341488 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctcggcgaagaaaaagatgtggtaaacttatcaggcatttt |
38341389 |
T |
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| Q |
132 |
tttaactgttgtccatgattattatattttacatacttattctgaa-----------------agtggacaaggctctgctggaagatgattatcttgat |
214 |
Q |
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| T |
38341388 |
tttaactgttgtccatgattattatattttacatacttattctgaaagtattttcattttcatagtggacaaggctctgctggaagatgattatcttgat |
38341289 |
T |
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| Q |
215 |
catcgaacgttacctcttcgagatattattagacgtggagaatgtagggagagatcggcagtgagcattctcaactataattag |
298 |
Q |
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| T |
38341288 |
catcgaacattacctcttcgagatattattagacgtggagaatgtagggagcgatcggcagtgagcattctcaactataattag |
38341205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 180
Target Start/End: Complemental strand, 38333736 - 38333588
Alignment:
| Q |
32 |
ggctaatgatgatttagaaaagggtactgaagaacctcctaaaaagttcccgcattcatctcggcgaagaaaaagatgtggtaaacttatcaggcaattt |
131 |
Q |
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| T |
38333736 |
ggctaatgatgattcagaaaaggttactgaagaacctcctaaaaagttcccccatgcatctcggcgaagaaaaagatgtggtaaacttgtcaaactatat |
38333637 |
T |
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| Q |
132 |
tttaactgttgtccatgattattatattttacatacttattctgaaagt |
180 |
Q |
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| T |
38333636 |
tttaactattgtctatgatgattatatattatatgcttattgtgaaagt |
38333588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 244
Target Start/End: Complemental strand, 38333573 - 38333507
Alignment:
| Q |
178 |
agtggacaaggctctgctggaagatgattatcttgatcatcgaacgttacctcttcgagatattatt |
244 |
Q |
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|||||||||||||||||||||| |||| ||||||||||| ||||| ||||| || | ||||||||| |
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| T |
38333573 |
agtggacaaggctctgctggaaaatgactatcttgatcaacgaacaatacctattagggatattatt |
38333507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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