View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_3 (Length: 697)
Name: NF19841_low_3
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 298 - 680
Target Start/End: Original strand, 8296504 - 8296888
Alignment:
| Q |
298 |
cactcctgacacacttataatgtgctgacaactgtttcctaatttttagggaaaatgaaaaaggagcacaaactatattagaagctcttataaaatatga |
397 |
Q |
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| T |
8296504 |
cactccttacacacttataatatgctgacaactgtttcctattttgtggggaaaatgaaaaagaagcacaaactatattagaagctcttataaaatatga |
8296603 |
T |
|
| Q |
398 |
aggggcctcatggaagacaataaatttacagaaat---cagaaatannnnnnnaccaagaacacgaatcacacgactagggagatggtgaagagaatttt |
494 |
Q |
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|||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8296604 |
aggggcctcagggaagacaataaatttacataaatgatcagaaatatttttt-accaagaacacgaatcacacgactagggagatggtgaagagaatttt |
8296702 |
T |
|
| Q |
495 |
acaagtttcagagagtataggctcaggaaaatatttgggtttaccatcgagaccgtatttggaagagagaatacaaaattggtcaggaaaacatttatcc |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8296703 |
acaagtttcagagagtataggctcaggaaaatatttgggtttaccatcgagaccgcatttggaagagagaatacaaaattggtcatgaaaacatttatcc |
8296802 |
T |
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| Q |
595 |
attgcaagaagagaggtactaactaaatcagtttctcaattgattccaacttaattaacgagttcctttctacttccgacaacttt |
680 |
Q |
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| T |
8296803 |
attgcaggaagagaggtactaattaaatcagtttctcaattgattccaacttattttatgagtttctttctacttccgacaacttt |
8296888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 35 - 176
Target Start/End: Original strand, 14343427 - 14343568
Alignment:
| Q |
35 |
catatgaccgagtaaactggaggtttgtccaagatacaatgagaaagatgggttttgatgagaagtgggtgaaatgaatgggaatttgtatggctaatgt |
134 |
Q |
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| T |
14343427 |
catatgatagagtaaactggtgttttgttcaaggtatgatgaggaagatggggttcgatgagaagtgggtgaaatggatggaaatttgtatggctaatgt |
14343526 |
T |
|
| Q |
135 |
gaaatatcaagtgcttgtaaatggtgatggtattggtttaca |
176 |
Q |
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||| ||||||||||||||||| |||||||||||||||||| |
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| T |
14343527 |
gaagtatcaagtgcttgtaaacaatgatggtattggtttaca |
14343568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 562 - 680
Target Start/End: Original strand, 14343997 - 14344115
Alignment:
| Q |
562 |
agaatacaaaattggtcaggaaaacatttatccattgcaagaagagaggtactaactaaatcagtttctcaattgattccaacttaattaacgagttcct |
661 |
Q |
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|||||||||||||||| |||||| || ||||| | || ||||||||||||| | |||||||||| |||||||||| ||||| || || | ||||| | |
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| T |
14343997 |
agaatacaaaattggttaggaaagcacttatctaaagcttgaagagaggtacttattaaatcagttgctcaattgataccaacatattttatgagtttat |
14344096 |
T |
|
| Q |
662 |
ttctacttccgacaacttt |
680 |
Q |
| |
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|||||||| ||||||||| |
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| T |
14344097 |
ttctacttttgacaacttt |
14344115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 91 - 200
Target Start/End: Complemental strand, 15163156 - 15163048
Alignment:
| Q |
91 |
gatgagaagtgggtgaaatgaatgggaatttgtatggctaatgtgaaatatcaagtgcttgtaaatggtgatggtattggtttacagggatcctggtaaa |
190 |
Q |
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|||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| | |||||||| | | |
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| T |
15163156 |
gatgagaaatgggtgacatgaatgggaatttgtatggataatgtaaaatatcaagtgtttgtaaatggtgatggtattggtttata-agatcctggaaga |
15163058 |
T |
|
| Q |
191 |
ggcttacgac |
200 |
Q |
| |
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|||||||||| |
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| T |
15163057 |
ggcttacgac |
15163048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 680
Target Start/End: Complemental strand, 15162650 - 15162529
Alignment:
| Q |
561 |
gagaatacaaaattggtcaggaaaacatttatccattgcaagaagagaggtactaactaaatcagtttctcaattgattccaactta-att-aacgagtt |
658 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | | ||||||||||||| | ||| | ||| |||||||||||||||| || ||| | ||||| |
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| T |
15162650 |
gagaatacaacattggtcaggaaaacatttatctaaagttggaagagaggtacttattaagttcgttgctcaattgattccaacatatattgtatgagtt |
15162551 |
T |
|
| Q |
659 |
cctttctacttccgacaacttt |
680 |
Q |
| |
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||||| |||| ||||||||||| |
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| T |
15162550 |
cctttatactcccgacaacttt |
15162529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 42898466 - 42898573
Alignment:
| Q |
1 |
ggggaagtagcactgaacatagatattggtaaaacatatgaccgagtaaactggaggtttgtccaagatacaatgagaaagatgggttttgatgagaagt |
100 |
Q |
| |
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||||||||||||||||| ||||||||| ||| ||||||| ||||||||||||| ||||||||| || ||||| ||||||| |||||| ||||| | |
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| T |
42898466 |
ggggaagtagcactgaagatagatattaacaaagcatatgattgagtaaactggagttttgtccaatgtatgatgaggaagatggattttgacgagaaat |
42898565 |
T |
|
| Q |
101 |
gggtgaaa |
108 |
Q |
| |
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|||||||| |
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| T |
42898566 |
gggtgaaa |
42898573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 40732416 - 40732284
Alignment:
| Q |
1 |
ggggaagtagcactgaacatagatattggtaaaacatatgaccgagtaaactggaggtttgtccaagatacaatgagaaagatgggttttgatgagaagt |
100 |
Q |
| |
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||||||| | ||||||| ||| ||||| | ||| ||||||| ||| ||||| ||| |||||||||| || ||||||||||||| ||||||||||| | |
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| T |
40732416 |
ggggaagcaacactgaagataaatattagcaaatcatatgatagagaaaactagagttttgtccaaggtatgatgagaaagatggagtttgatgagaaat |
40732317 |
T |
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| Q |
101 |
gggtgaaatgaatgggaatttgtatggctaatg |
133 |
Q |
| |
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||||| | ||| |||||||||||||||||| |
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| T |
40732316 |
tagtgaagtatatgagaatttgtatggctaatg |
40732284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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