View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_31 (Length: 300)
Name: NF19841_low_31
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 22337896 - 22338180
Alignment:
| Q |
1 |
gagtagaaaaagtcaagaatcaacaattgatcttccaaaaatcaatattcgtaagtttaataattacccaaccaggaacctttattaaatccaaattaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22337896 |
gagtagaaaaagtcaagaatcaacaattgatcttccaaaa-tcaatattcgtaagtttaataattacccaaccaggaacctttattaaatccaaattaat |
22337994 |
T |
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| Q |
101 |
caactcttcagtttcttactttcttattgtcgatgagtttaatttaaaccttctggnnnnnnnttatgcttctaaattaa--tannnnnnnccaaacaca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |
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| T |
22337995 |
caactcttcagtttcttactttcttattgtcgatgagtttaatttaaaccttctggaaaaaaattatgcttctaaattaaattttttttttccaaacaca |
22338094 |
T |
|
| Q |
199 |
aacaaagaagatcccaaagcaggtccccattttgcaaagtcttgctaacccctaacttgccattgctcaagagggaggcttggaga |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22338095 |
aacaaagaagatcccaaagcaggtccccattttgcaaagtcttgctaacccctaacttgccattgcttaagagggaggcttggaga |
22338180 |
T |
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