View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_36 (Length: 274)
Name: NF19841_low_36
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 54714181 - 54713940
Alignment:
| Q |
16 |
atagggttcatatcacttcaatttataacacaacatttttccttaaacgaaaaaataagtgaattaatgtggctttgcttgagaaaataatattttgaca |
115 |
Q |
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| T |
54714181 |
ataggcttcatatcacttcaatttataacacaacatttttccttaaacgaaaaaataagtgaattaatgtggctttgcttgagaaaataatattttgaca |
54714082 |
T |
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| Q |
116 |
aaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccagttaatagttgcatgatagaaagactggctaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54714081 |
aaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccagttaatagttgcatgatagaaagactggctaa |
54713982 |
T |
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| Q |
216 |
aaagtgaaacttttgaagagcgaatgattctgcatttgtctt |
257 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
54713981 |
aaaatgaaacttttgaagagcgaatgattctgcatttgtctt |
54713940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 54721101 - 54720933
Alignment:
| Q |
16 |
atagggttcatatcacttcaatttataacacaacatttttccttaaacgaaaaaataagtgaattaatgtggctttgcttgagaaaataatattttgaca |
115 |
Q |
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| T |
54721101 |
ataggcttcatatcacttcattttataacaccacatttatccttaaacgaaaaaataaatgaattaatgtggctttgcgtgagaaagtaatattttgaca |
54721002 |
T |
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| Q |
116 |
aaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgaccag |
184 |
Q |
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| T |
54721001 |
aaactaagctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaatggaccag |
54720933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 182
Target Start/End: Complemental strand, 54680452 - 54680297
Alignment:
| Q |
26 |
tatcacttcaatttataacacaacatttttccttaaacgaaaaaataagtgaattaatgtggctttgcttgagaa---aataatattttgacaaaactaa |
122 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||| ||||||||||| |||||| | |||||||||||||||| ||| |
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| T |
54680452 |
tatcacttcaatttataacaccacatttttccataaacgaaaaaataaatgaattagtgtggctttgcgtgagaaattagtaatattttgacaaaagtaa |
54680353 |
T |
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| Q |
123 |
gctagtttaaccgtgtgggaagcatgcatggcgttaaatatgatggttaattaattgacc |
182 |
Q |
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| T |
54680352 |
gctagtttaaccgtgtgggaa----gcatggcgttaaatatgatggttaattaattgacc |
54680297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 54726731 - 54726626
Alignment:
| Q |
77 |
aattaatgtggctttgcttgagaaaataatattttgacaaaactaagcta--gtttaaccgtgtgggaagcatgcatggcgttaaa---tatgatggtta |
171 |
Q |
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|||||||||| |||||| | |||||| |||||||| ||||| |||| || ||||||||||||||||||||||||||| || ||| ||||| ||||| |
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| T |
54726731 |
aattaatgtgactttgcgttagaaaa--atattttgtcaaaattaaggtatagtttaaccgtgtgggaagcatgcatggtgtcaaatactatgaaggtta |
54726634 |
T |
|
| Q |
172 |
attaattg |
179 |
Q |
| |
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|||||||| |
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| T |
54726633 |
attaattg |
54726626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 5302597 - 5302492
Alignment:
| Q |
77 |
aattaatgtggctttgcttgagaaaataatattttgacaaaactaagcta--gtttaaccgtgtgggaagcatgcatggcgttaaa---tatgatggtta |
171 |
Q |
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|||||||||| |||||| |||||||| |||||||| ||||| |||| || ||||||||||||||||||||||||||| || ||| ||||| ||||| |
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| T |
5302597 |
aattaatgtgactttgcgtgagaaaa--atattttgtcaaaattaaggtatagtttaaccgtgtgggaagcatgcatggtgtaaaatactatgaaggtta |
5302500 |
T |
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| Q |
172 |
attaattg |
179 |
Q |
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|||||||| |
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| T |
5302499 |
attaattg |
5302492 |
T |
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