View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19841_low_39 (Length: 262)
Name: NF19841_low_39
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_39 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 239
Target Start/End: Original strand, 27744315 - 27744539
Alignment:
| Q |
15 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27744315 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcgagaggctcgaaaggatgaaacaaaagtggcaattgactct |
27744414 |
T |
|
| Q |
115 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27744415 |
cgcttcaagcacatgttcaatgacaattcttttttctcttattctgcaccaatcgacaagagaggcaggtatatagaaaacaacctcactttaaaatctg |
27744514 |
T |
|
| Q |
215 |
attttcttcgccattactacaaagt |
239 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27744515 |
attttcttcgccattactacaaagt |
27744539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 49513337 - 49513388
Alignment:
| Q |
188 |
tagaaaacaacctcactttaaaatctgattttcttcgccattactacaaagt |
239 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
49513337 |
tagaaaacaacctcacttttaaatctgattttcttcgccattactacaaagt |
49513388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 49513261 - 49513321
Alignment:
| Q |
15 |
gaagaagaagcttatcagtgatcctcgatttgtaggaatgcacacagaccctcgttttcga |
75 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||| |
|
|
| T |
49513261 |
gaagaagaagcttatcaatgatcctcggtttgtaggagtgctcacagaccctctttttcga |
49513321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University