View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19841_low_4 (Length: 674)
Name: NF19841_low_4
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_4 |
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| [»] scaffold0089 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 545; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 7 - 658
Target Start/End: Complemental strand, 16729320 - 16728668
Alignment:
| Q |
7 |
aggaagaagttggaatcgaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgt |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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| T |
16729320 |
aggaagaagttggaatcgaagtctgaatcgtggtggtgaaatcgtttctctcattcttctctggttagatcttcattcccttcttttacatttccattct |
16729221 |
T |
|
| Q |
107 |
ctctctttattatggttgaattagaaaacctagaaattgaattgtaaaccactt-atttagctcggtgtttttgaaagcacgacggagggagcgaagggt |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
16729220 |
ctctctttattatggttgaattagataacctagaaattgaattctaaaccacatgatttagctccgtgtttttgaaatcacgacggagggagcgaaggaa |
16729121 |
T |
|
| Q |
206 |
tgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggaggaaggagaggaagacgtgagaagctaggagagagtgaggtggtggaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
16729120 |
tgagagaaaggagagagtagtgaagagagtgaaaacggggtcgtttggggaggaaggagaggaagacgtgagaagcaaggagagagtgaggtggtggaga |
16729021 |
T |
|
| Q |
306 |
tgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttggaga |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
16729020 |
tgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggtttaggagggtttggaga |
16728921 |
T |
|
| Q |
406 |
gaagagagggactgttcggagagtggttgtggattttcagtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgttgt |
505 |
Q |
| |
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||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| || |
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|
| T |
16728920 |
gaagagagggatttttcggagagtggttgtggattttcagtgtggtgggtttcgcgtaggtcggagatttctgttataatgcgggagattgtttcgtcgt |
16728821 |
T |
|
| Q |
506 |
ccatctccggtggcgctacaccggtctgtgcataacgagatttgaagttattgaagctttttgtgtgtggttttttgaatttaaaatgtagtgggaactt |
605 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16728820 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttattgaagctttttctgtgtggttttttgaatttaaaatgtagtgggaactt |
16728721 |
T |
|
| Q |
606 |
tgtaagtccatagggaattaccatgttatggattcgatttaaagatttgaaca |
658 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
16728720 |
tgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaaca |
16728668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 586 - 658
Target Start/End: Complemental strand, 34690307 - 34690235
Alignment:
| Q |
586 |
ttaaaatgtagtgggaactttgtaagtccatagggaattaccatgttatggattcgatttaaagatttgaaca |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34690307 |
ttaaaatgtagtgggaactttgtaagtccatagggaattaccgtgttatggattcgatttaaagatttgaaca |
34690235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 20512400 - 20512465
Alignment:
| Q |
52 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
117 |
Q |
| |
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||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
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| T |
20512400 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
20512465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 7 - 556
Target Start/End: Complemental strand, 49946711 - 49946161
Alignment:
| Q |
7 |
aggaagaagttggaatcgaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgt |
106 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
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|
| T |
49946711 |
aggaagaagttggaatcgaagtctgaatcgtggtggtgaaatcgtttctctcattcttctctggttagatcttcattcccttcttttacatttccatttt |
49946612 |
T |
|
| Q |
107 |
ctctctttattatggttgaattagaaaacctagaaattgaattgtaaaccactt-atttagctcggtgtttttgaaagcacgacggagggagcgaagggt |
205 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
49946611 |
ctctctttattatggttgaattagataacctagaaattgaattctaaaccacatgatttagctccgtgtttttgaaatcacgacggagggagcgaaggaa |
49946512 |
T |
|
| Q |
206 |
tgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggaggaaggagaggaagacgtgagaagctaggagagagtgaggtggtggaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
49946511 |
tgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggaggaaggagatgaagacgtgagaagcgaggagagagtgaggtggtggaga |
49946412 |
T |
|
| Q |
306 |
tgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttggaga |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49946411 |
tgaatccattgtggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagagtgggtctaaaggttgggaatggttgaggagggtttggaga |
49946312 |
T |
|
| Q |
406 |
gaagagagggactgttcggagagtggttgtggattttcagtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgttgt |
505 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
49946311 |
gaagagagggattgttcggagagtggttgtggattttcggtgtggtgggtttcgcggaggtcggagatttctgttacgatgcgggagattgtttcgtcgt |
49946212 |
T |
|
| Q |
506 |
ccatctccggtggcgctacaccggtctgtgcataacgagatttgaagttat |
556 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
49946211 |
ccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttat |
49946161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 171 - 587
Target Start/End: Original strand, 14240057 - 14240478
Alignment:
| Q |
171 |
gtgtttttgaaagcacgacggagggagcgaagggttgagagaaaggagagagtagtgaagagagtgaaaacgggggcgtttggggag-----gaaggaga |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
14240057 |
gtgtttttgaaagcacgacggagggagcgaaggaatgagagaaaggagagaggagtgaagagagtgaaaacgggggcgtttggggagaggaggaaggaga |
14240156 |
T |
|
| Q |
266 |
ggaagacgtgagaagctaggagagagtgaggtggtggagatgaatccattgcggtgtcgattgggggaattaggtgggaaggtgaaacggcgtcgtagag |
365 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14240157 |
ggaagacgtgagaagcgaggagagagtgaggtggtggagatgaatccattgcggtggcgattgggggaattaggtgggaaggtgaaacggcgtcgtagag |
14240256 |
T |
|
| Q |
366 |
tgggtctaaaggttgggaatggttgaggagggtttggagagaagagagggactgttcggagagtggttgtggattttcagtgtggtgggtttcgcggagg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14240257 |
tgggtctaaaggttgggaatggttgaggagggtttggagagaagagagggattgttcggagagtggttgtggattttcggtgtggtgggtttcgcggagg |
14240356 |
T |
|
| Q |
466 |
tcggagatttctgttacgatgcgggagattgtttcgttgtccatctccggtggcgctacaccggtctgtgcataacgagatttgaagttattgaagcttt |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
14240357 |
tcggagatttctgttacgatgcgggagattgtttcgtcgtccatctccggtggcgctactccggtctgtgcagaacgagatttgaagttattgaagcttt |
14240456 |
T |
|
| Q |
566 |
ttgtgtgtggttttttgaattt |
587 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
14240457 |
ttctgtgtggttttttgaattt |
14240478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 2e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 17009548 - 17009427
Alignment:
| Q |
24 |
gaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttattatggtt |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
17009548 |
gaagtcggaatcgtggtggtgaaaatgtttctctctttcttctctggttagatcttcattcccttcttttacacttccattctctctctttattatggtt |
17009449 |
T |
|
| Q |
124 |
gaattagaaaacctagaaattg |
145 |
Q |
| |
|
|||||||| ||||||| ||||| |
|
|
| T |
17009448 |
gaattagataacctaggaattg |
17009427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 20028247 - 20028312
Alignment:
| Q |
52 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||||||||||| |
|
|
| T |
20028247 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctctctttatt |
20028312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 24501265 - 24501174
Alignment:
| Q |
10 |
aagaagttggaatcgaagtcggaatcgtggtggtgaaatggtttctctcattcttctctggttatatcttcattcccttcttttacacttcc |
101 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24501265 |
aagaagtcgaaatcgaagtcggaatcgtggtggtgaaaacgtttctctctttcttctctggttagatcttcattcccttcttttacacttcc |
24501174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 628 - 658
Target Start/End: Complemental strand, 30230571 - 30230541
Alignment:
| Q |
628 |
atgttatggattcgatttaaagatttgaaca |
658 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
30230571 |
atgttatggattcgatttaaagatttgaaca |
30230541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 13371431 - 13371366
Alignment:
| Q |
52 |
ttctctcattcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
|
|
| T |
13371431 |
ttctctctttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
13371366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0089 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0089
Description:
Target: scaffold0089; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 33391 - 33448
Alignment:
| Q |
60 |
ttcttctctggttatatcttcattcccttcttttacacttccattgtctctctttatt |
117 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| ||||||| |||| ||||||| |
|
|
| T |
33391 |
ttcttctctggttagatcttcattttcttcttttacagttccattctctccctttatt |
33448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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