View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19841_low_43 (Length: 254)

Name: NF19841_low_43
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19841_low_43
NF19841_low_43
[»] chr4 (20 HSPs)
chr4 (9-122)||(53934863-53934978)
chr4 (9-98)||(8484888-8484977)
chr4 (23-87)||(21069285-21069349)
chr4 (23-102)||(4688909-4688989)
chr4 (9-98)||(6102102-6102192)
chr4 (202-248)||(53935058-53935104)
chr4 (22-97)||(7784321-7784397)
chr4 (30-102)||(35233070-35233142)
chr4 (19-118)||(3666825-3666927)
chr4 (32-98)||(1564844-1564910)
chr4 (22-97)||(48653629-48653706)
chr4 (22-97)||(7764209-7764285)
chr4 (10-98)||(27743416-27743504)
chr4 (40-102)||(5122155-5122217)
chr4 (40-102)||(45226619-45226681)
chr4 (23-99)||(15724121-15724198)
chr4 (46-98)||(28148017-28148069)
chr4 (31-76)||(4642683-4642728)
chr4 (40-85)||(35014520-35014565)
chr4 (23-95)||(45983613-45983686)
[»] chr3 (15 HSPs)
chr3 (22-122)||(21562782-21562883)
chr3 (9-102)||(27054294-27054387)
chr3 (23-102)||(42362991-42363071)
chr3 (22-102)||(44651191-44651271)
chr3 (23-102)||(4280516-4280596)
chr3 (46-119)||(22472819-22472894)
chr3 (9-97)||(25919032-25919120)
chr3 (48-102)||(5640501-5640555)
chr3 (48-102)||(50578772-50578826)
chr3 (9-87)||(55467431-55467509)
chr3 (28-102)||(20846708-20846783)
chr3 (23-87)||(37045540-37045605)
chr3 (53-116)||(37656731-37656795)
chr3 (24-102)||(52632255-52632334)
chr3 (23-99)||(17144510-17144587)
[»] chr1 (23 HSPs)
chr1 (19-119)||(25507103-25507205)
chr1 (28-102)||(10847301-10847376)
chr1 (28-119)||(17651979-17652073)
chr1 (23-96)||(18310170-18310244)
chr1 (41-102)||(41751392-41751453)
chr1 (29-96)||(8268880-8268948)
chr1 (9-63)||(16063069-16063123)
chr1 (9-87)||(25559809-25559887)
chr1 (9-87)||(26344838-26344916)
chr1 (23-102)||(32910144-32910224)
chr1 (23-119)||(17989273-17989372)
chr1 (9-76)||(27350854-27350921)
chr1 (40-87)||(50951827-50951874)
chr1 (23-100)||(382282-382360)
chr1 (48-102)||(11073144-11073198)
chr1 (23-119)||(11537024-11537126)
chr1 (24-85)||(23474895-23474957)
chr1 (28-119)||(35992352-35992446)
chr1 (40-119)||(44055980-44056061)
chr1 (40-102)||(52829055-52829117)
chr1 (40-119)||(9961940-9962021)
chr1 (23-102)||(8165317-8165396)
chr1 (31-87)||(52380524-52380580)
[»] chr8 (16 HSPs)
chr8 (19-98)||(13325525-13325604)
chr8 (37-101)||(41346154-41346218)
chr8 (9-87)||(1271357-1271435)
chr8 (9-98)||(22810970-22811058)
chr8 (22-102)||(40436665-40436746)
chr8 (19-98)||(11219180-11219259)
chr8 (40-102)||(9012609-9012671)
chr8 (40-102)||(28441716-28441778)
chr8 (15-87)||(4785461-4785533)
chr8 (31-87)||(12193252-12193308)
chr8 (31-87)||(12437680-12437736)
chr8 (31-102)||(38926207-38926279)
chr8 (31-98)||(24681867-24681934)
chr8 (51-98)||(31477928-31477975)
chr8 (28-63)||(14185685-14185721)
chr8 (36-72)||(30253553-30253589)
[»] chr7 (19 HSPs)
chr7 (22-99)||(22701114-22701191)
chr7 (9-98)||(10338586-10338675)
chr7 (9-98)||(11834243-11834332)
chr7 (23-102)||(30855324-30855404)
chr7 (28-102)||(2734571-2734645)
chr7 (24-98)||(23729602-23729676)
chr7 (28-96)||(26524716-26524785)
chr7 (23-102)||(48643016-48643096)
chr7 (23-102)||(49012278-49012358)
chr7 (28-102)||(32237900-32237975)
chr7 (53-99)||(8118057-8118103)
chr7 (40-102)||(23675624-23675686)
chr7 (9-102)||(22298747-22298840)
chr7 (9-102)||(33434326-33434420)
chr7 (29-96)||(21237553-21237621)
chr7 (28-99)||(46147444-46147516)
chr7 (23-91)||(7697517-7697585)
chr7 (31-87)||(20334820-20334876)
chr7 (40-119)||(23032928-23033008)
[»] chr5 (19 HSPs)
chr5 (40-102)||(34881094-34881156)
chr5 (9-98)||(33792864-33792953)
chr5 (23-122)||(7487068-7487170)
chr5 (9-87)||(10090445-10090523)
chr5 (24-98)||(25495320-25495394)
chr5 (33-119)||(40331237-40331326)
chr5 (28-100)||(34111545-34111620)
chr5 (28-102)||(2589211-2589287)
chr5 (28-102)||(12378856-12378931)
chr5 (28-102)||(14652692-14652767)
chr5 (51-98)||(40692714-40692761)
chr5 (28-96)||(18845751-18845820)
chr5 (58-102)||(40109393-40109438)
chr5 (23-102)||(11402826-11402906)
chr5 (19-87)||(34087635-34087703)
chr5 (9-122)||(36567930-36568046)
chr5 (24-98)||(28224639-28224713)
chr5 (18-98)||(4414445-4414526)
chr5 (31-76)||(41455110-41455155)
[»] chr6 (11 HSPs)
chr6 (23-98)||(6400051-6400126)
chr6 (48-102)||(13532049-13532103)
chr6 (9-86)||(22414018-22414095)
chr6 (19-96)||(31945218-31945295)
chr6 (28-102)||(20500794-20500869)
chr6 (31-87)||(7169872-7169928)
chr6 (28-102)||(17306595-17306670)
chr6 (42-96)||(4563109-4563163)
chr6 (40-102)||(8064737-8064799)
chr6 (53-87)||(13092255-13092289)
chr6 (40-100)||(14940349-14940409)
[»] chr2 (11 HSPs)
chr2 (27-102)||(11377434-11377510)
chr2 (40-118)||(30514697-30514777)
chr2 (53-119)||(15320345-15320414)
chr2 (35-102)||(21734276-21734343)
chr2 (41-119)||(1331241-1331321)
chr2 (53-102)||(10242514-10242563)
chr2 (23-87)||(11678226-11678290)
chr2 (23-87)||(11695704-11695768)
chr2 (9-87)||(5862458-5862536)
chr2 (40-96)||(17762994-17763050)
chr2 (50-102)||(44085744-44085796)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 53934863 - 53934978
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatc--tta 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||   ||    
T  53934863 tccaacaatattctcaactacatagaccaaataaaaatgtggataaaaagtaatcatattttataagataggcaaaagattaagattttatcatcatcta 53934962  T
Q  107 aaagttcaagtagtac 122  Q
    ||||||||||||||||    
T  53934963 aaagttcaagtagtac 53934978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 8484888 - 8484977
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||| ||||||||||| ||| |||||||||| ||||  ||||||||||||||||||||||| ||||| |||||||||| ||| ||||||    
T  8484888 tccaacaatattctcaaatacgtagaccaaattaaaacatggacaaaaagtaatcatattttataagaaatgcaaaagactaaaatttta 8484977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 21069285 - 21069349
Alignment:
Q  23 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  21069285 caactacgtagaccaaattaaaatgtggacaaaaagtaatcatattatgtaagaaatgcaaaaga 21069349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 4688909 - 4688989
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||| ||||||| |||||||| ||||||||||||||||||| | ||||| |||||||||||||| ||||||||||    
T  4688909 caacaacatataccaaattaaaaatgtagacaaaaagtaatcatattctataagaaatgcaaaagattaaaattttatcat 4688989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 6102102 - 6102192
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaa-atgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||| ||||||| |||| |||||||| |||||||| |||||||||| |||||||| ||||||||| || |||||||| | ||||||||||    
T  6102102 tccaacaatattcccaaccacatagactaaataaaaaatgtggacaataagtaatcctattttgtatgaaatgcaaaaaactaagatttta 6102192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 248
Target Start/End: Original strand, 53935058 - 53935104
Alignment:
Q  202 gatttttcgagtattggttcacgtcacatatgtttaattcatatttt 248  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  53935058 gatttttcgagtattggttcacgtgacatatgtttaattcatatttt 53935104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 7784397 - 7784321
Alignment:
Q  22 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttt 97  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||||||||||||||| ||| || ||| |||||||||    
T  7784397 tcaacaacatagaccaaattaaaaacatggacaaaaagtaatcatattttgtaagaaatgtaatagactaagatttt 7784321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 35233142 - 35233070
Alignment:
Q  30 atagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||| |||| |||||||||| |||||  |||| ||||||| ||| |||||||||||||||||||||    
T  35233142 atagaccaaattaaaacgtggacaaaaggtaattttattatgtaagaaatgtaaaagattaagattttatcat 35233070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 3666927 - 3666825
Alignment:
Q  19 ttctcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat--cttaaaagttcaa 115  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||||||||| | | |||  ||||||| | ||||||||||||||   ||||||||||||    
T  3666927 ttcttaacaacatagaccaaattaaaaaggtggacaaaaagtaatcatattctatgagaagtgcaaaacactaagattttatcattctttaaaagttcaa 3666828  T
Q  116 gta 118  Q
    |||    
T  3666827 gta 3666825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 1564910 - 1564844
Alignment:
Q  32 agaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||||||| |||||||||||||||| ||||| |||||||||||| || ||||||| ||| ||||||    
T  1564910 agaccaaattaaaatgtggacaaaaaataatcctattttgtaagaaatacaaaagagtaaaatttta 1564844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 48653706 - 48653629
Alignment:
Q  22 tcaactacatagaccaaat-aaaaatgtggacaaaaa-gtaatcatattttgtaagatatgcaaaagattaagatttt 97  Q
    ||||||||||||||||||| ||||| ||||||||||| |||||| |||||||| ||| || ||||||| |||||||||    
T  48653706 tcaactacatagaccaaattaaaaacgtggacaaaaaagtaatcttattttgttagaaatacaaaagactaagatttt 48653629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 7764285 - 7764209
Alignment:
Q  22 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttt 97  Q
    ||||| || |||||||||| ||||| |||| ||||||||||||||||||| ||||| ||| |||||| |||||||||    
T  7764285 tcaacaacttagaccaaattaaaaacgtggtcaaaaagtaatcatattttataagaaatgtaaaagactaagatttt 7764209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 27743416 - 27743504
Alignment:
Q  10 ccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||| ||| ||| ||||||  ||||| ||||| ||| | ||||||||||||||| |||||||||||| || ||||||||||| ||||||    
T  27743416 ccaacaatgttcccaactaggtagactaaatataaacgcggacaaaaagtaatcctattttgtaagaaatacaaaagattaaaatttta 27743504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 5122217 - 5122155
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| ||||||||||||||||  |||||||||| | |||||||||| |||| |||||||||    
T  5122217 taaaaacgtggacaaaaagtaattctattttgtaaaagatgcaaaagactaaggttttatcat 5122155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 45226619 - 45226681
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| ||| ||||||||||||  |||||||||||| |||||||||  ||||||||||||||    
T  45226619 taaaaacgtgaacaaaaagtaattttattttgtaagaaatgcaaaaggataagattttatcat 45226681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 15724121 - 15724198
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 99  Q
    |||| ||||||||||| | |||||  ||||||||| |||||| |||||| ||||| |||||||||| |||||||||||    
T  15724121 caacaacatagaccaagttaaaaacatggacaaaatgtaatcctattttttaagaaatgcaaaagactaagattttat 15724198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 28148017 - 28148069
Alignment:
Q  46 tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||| |||||||||||||||||||||||| || ||||||| ||| ||||||    
T  28148017 tgtggataaaaagtaatcatattttgtaagaaattcaaaagactaaaatttta 28148069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 4642683 - 4642728
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaaga 76  Q
    |||||||||| |||| ||||||||||||||||| |||||| |||||    
T  4642683 tagaccaaattaaaacgtggacaaaaagtaatcctattttataaga 4642728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 35014520 - 35014565
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaa 85  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||||||    
T  35014520 taaaaacgtggacaaaaaataatcttattttgtaagaaatgcaaaa 35014565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 45983613 - 45983686
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatt 95  Q
    |||| ||||||||||| | |||||  |||||||||  ||||| |||||| ||||| ||||||||||||||||||    
T  45983613 caacaacatagaccaagttaaaaacatggacaaaacataatcctattttctaagaaatgcaaaagattaagatt 45983686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 21562782 - 21562883
Alignment:
Q  22 tcaactacatagaccaaataaaa-atgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatcttaaaagttcaagtagt 120  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||||||| || ||||||||||||||  |  |||||||||||||    
T  21562782 tcaactacatagaccaaataaaaaatgtggacaaaaagtaatcatattttattagaaatgcaaatgaataagattttatcattctttaagttcaagtagt 21562881  T
Q  121 ac 122  Q
    ||    
T  21562882 ac 21562883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 27054294 - 27054387
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||||||| |||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||| || ||||||| ||| |||| |||||    
T  27054294 tccaacaatattcccaactatataaaccaaattaaaatatggacaaaaagtaatcatattttgtaagaaatacaaaagagtaaaatttaatcat 27054387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 42363071 - 42362991
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||    
T  42363071 caacgacatagaccaagttaaaaacgtggacaaaaagtaatcatattttgtaagaaatgcaaaatactaagattttatcat 42362991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 44651191 - 44651271
Alignment:
Q  22 tcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||||| ||||| ||||||| ||||||||| |||||| |||||||||||| |||||||||| ||||||||| ||||    
T  44651191 tcaacaacatataccaagtaaaaatatggacaaaacgtaatcttattttgtaagaaatgcaaaagactaagattttttcat 44651271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 4280516 - 4280596
Alignment:
Q  23 caactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||||||||||  ||||  |||||||||| |||||||||||||||| | |||||| ||| ||||||||||||||    
T  4280516 caactacatagaccaaatttaaaacatggacaaaaaataatcatattttgtaataaatgcaacagactaagattttatcat 4280596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 119
Target Start/End: Complemental strand, 22472894 - 22472819
Alignment:
Q  46 tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct--taaaagttcaagtag 119  Q
    ||||| ||||||||||||||||| ||||||| |||||||| | |||||||||||||| |  |||||||||||||||    
T  22472894 tgtgggcaaaaagtaatcatattatgtaagaaatgcaaaatactaagattttatcattttctaaaagttcaagtag 22472819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 97
Target Start/End: Complemental strand, 25919120 - 25919032
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttt 97  Q
    ||||| ||| |||||||||||  ||||||||| ||||||||||||||||||||||| | ||||||| | || ||||||| ||| |||||    
T  25919120 tccaacaatgttctcaactacgcagaccaaattaaaatgtggacaaaaagtaatcaaactttgtaataaatacaaaagactaaaatttt 25919032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 5640555 - 5640501
Alignment:
Q  48 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||    
T  5640555 tggacaaaatgtaatcctattttgtaagaaatgcaaaagactaagattttatcat 5640501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 50578826 - 50578772
Alignment:
Q  48 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||    
T  50578826 tggacaaaacgtaatcctattttgtaagaaatgcaaaagactaagattttatcat 50578772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 55467509 - 55467431
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| ||| ||| ||||||| ||||||||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  55467509 tccaacaatgttcgcaactacgtagaccaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 55467431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 20846708 - 20846783
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||||||| ||||| ||||||| |||||||| ||||| ||||||| ||  |||||||||||||||||||||    
T  20846708 acataaaccaaattaaaaacgtggacacaaagtaattatattatgtaagaaatataaaagattaagattttatcat 20846783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 37045540 - 37045605
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    |||| ||||| ||||||| ||||| | ||||||||||||||| |||||||||||| ||||||||||    
T  37045540 caacaacataaaccaaattaaaaacgcggacaaaaagtaatcttattttgtaagaaatgcaaaaga 37045605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 116
Target Start/End: Complemental strand, 37656795 - 37656731
Alignment:
Q  53 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct-taaaagttcaag 116  Q
    |||||||||||||||| | ||||| ||||||||| || |||||||| ||||| ||||||||||||    
T  37656795 aaaaagtaatcatattatttaagaaatgcaaaaggttgagattttaacatctctaaaagttcaag 37656731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 52632255 - 52632334
Alignment:
Q  24 aactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||| ||||||| ||||| ||||||||||| |||| || || ||||||| ||| |||| | ||||||||||||||    
T  52632255 aactacataaaccaaattaaaaacgtggacaaaaattaataatgttatgtaagaaatgtaaaatactaagattttatcat 52632334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 17144587 - 17144510
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaa-gtaatcatattttgtaagatatgcaaaagattaagattttat 99  Q
    |||||||||||| ||||| ||||| ||||||||||| | |||| |||||| ||||| |||||||||| |||||||||||    
T  17144587 caactacatagagcaaatgaaaaacgtggacaaaaatgaaatc-tattttataagaaatgcaaaagactaagattttat 17144510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 25507103 - 25507205
Alignment:
Q  19 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatc--ttaaaagttcaag 116  Q
    |||| ||| ||||| || |||| |||| ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||   ||||||||||||    
T  25507103 ttctaaacaacataaactaaatgaaaaagtggataaaaagtaatcatattttgtaagaaatgcaaaagattaatattttatcatcgtctaaaagttcaag 25507202  T
Q  117 tag 119  Q
    |||    
T  25507203 tag 25507205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 10847376 - 10847301
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||||| ||||||||||||||||||||||  ||||  |||||| ||| |||||| ||||||||||||||    
T  10847376 acatagaccaaattaaaaatgtggacaaaaagtaattctattacgtaagaaatgtaaaagactaagattttatcat 10847301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 119
Target Start/End: Original strand, 17651979 - 17652073
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 119  Q
    ||||| ||||||| |||||||||||||||||||||| ||| | ||||||| ||| |||||| ||||||||||| | ||| |||||||||||||||    
T  17651979 acataaaccaaattaaaaatgtggacaaaaagtaattatactatgtaagaaatgtaaaagactaagattttattattctctaaaagttcaagtag 17652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 18310170 - 18310244
Alignment:
Q  23 caactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    ||||||||||||||||||  |||| ||| |||||||||||||||||||||||||| ||  |||||| ||||||||    
T  18310170 caactacatagaccaaatttaaaacgtgaacaaaaagtaatcatattttgtaagaaatataaaagactaagattt 18310244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 41751392 - 41751453
Alignment:
Q  41 aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| |||||||||||||||  ||||| |||||| |||||||||||||||| ||||||||    
T  41751392 aaaaatatggacaaaaagtaattttatttagtaagaaatgcaaaagattaagactttatcat 41751453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 8268880 - 8268948
Alignment:
Q  29 catagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    |||||||||||| ||||||||||||||||||||||   ||||| ||||| |||||||||| ||||||||    
T  8268880 catagaccaaattaaaaatgtggacaaaaagtaattccattttttaagaaatgcaaaagactaagattt 8268948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 63
Target Start/End: Original strand, 16063069 - 16063123
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatc 63  Q
    ||||| ||| ||||||||||| |||||||||| |||| |||||||||||||||||    
T  16063069 tccaacaatgttctcaactacgtagaccaaattaaaacgtggacaaaaagtaatc 16063123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 25559887 - 25559809
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| ||| ||||||||| | |||||||||| |||| |||||||||||||||||  | ||||||||| || |||||||    
T  25559887 tccaacaatgttctcaacttcgtagaccaaattaaaacgtggacaaaaagtaatccaactttgtaagaaatacaaaaga 25559809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 26344916 - 26344838
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| ||| ||| ||||||| || |||||||  ||| ||||||||||||||||| |||||||||||| || |||||||    
T  26344916 tccaataatgttcccaactacgtataccaaatttaaacgtggacaaaaagtaatcctattttgtaagaaatacaaaaga 26344838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 32910224 - 32910144
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||||||| | |||||  |||||||||  ||||| |||||||||||| |||||||||| ||||||||| ||||    
T  32910224 caacaacatagaccaagttaaaaacatggacaaaacataatcctattttgtaagaaatgcaaaagactaagattttctcat 32910144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 17989273 - 17989372
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 119  Q
    |||| ||||| ||||||| ||||| ||||||| ||||||||  |||| ||||||| ||  ||||||||||||| |||||| ||| |||||||||||||||    
T  17989273 caacaacataaaccaaattaaaaacgtggacacaaagtaattctattatgtaagaaatataaaagattaagatgttatcattctataaaagttcaagtag 17989372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 27350854 - 27350921
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaaga 76  Q
    ||||| |||||| |||||||| |||| ||||| ||||  |||||||||||||| | ||||||||||||    
T  27350854 tccaacaatattttcaactacgtagagcaaattaaaacttggacaaaaagtaaccctattttgtaaga 27350921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 50951874 - 50951827
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    |||||||||||||||||||||||| |||| ||||||| ||| ||||||    
T  50951874 taaaaatgtggacaaaaagtaatcttattatgtaagaaatgtaaaaga 50951827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 100
Target Start/End: Original strand, 382282 - 382360
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatc 100  Q
    |||| ||||||||| ||| ||||||| |||||||||||||||||||  ||||||| ||| ||| || ||| ||||||||    
T  382282 caacaacatagaccgaattaaaaatgcggacaaaaagtaatcatatactgtaagaaatgtaaatgactaaaattttatc 382360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 11073198 - 11073144
Alignment:
Q  48 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||| | |||| |||||||||||| |||||||||| |||||| |||||||    
T  11073198 tggacaaaacgaaatcctattttgtaagaaatgcaaaagactaagatgttatcat 11073144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 11537024 - 11537126
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatc-----ttaaaagttcaag 116  Q
    |||||||  ||||||||| ||||||||  |||||| |||||| ||||| |||||| ||||||||  |||||||||||| |||     |||||||||||||    
T  11537024 caactacgcagaccaaattaaaaatgttaacaaaatgtaatcctatttcgtaagaaatgcaaaaagttaagattttattatcattttttaaaagttcaag 11537123  T
Q  117 tag 119  Q
    |||    
T  11537124 tag 11537126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 23474957 - 23474895
Alignment:
Q  24 aactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaa 85  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||| ||| ||||    
T  23474957 aactatatagaccaaattaaaaacgtggacaaaaactaatcctattttgtaagaaatgaaaaa 23474895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 119
Target Start/End: Complemental strand, 35992446 - 35992352
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 119  Q
    ||||| ||||||| ||||| |||||||||| |||||  |||| ||||||| ||| |||||| ||||||||||| | ||| |||||||||||||||    
T  35992446 acataaaccaaattaaaaacgtggacaaaacgtaattctattatgtaagaaatgtaaaagactaagattttattattctctaaaagttcaagtag 35992352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 44055980 - 44056061
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct--taaaagttcaagtag 119  Q
    |||||| ||||| ||||||||||| |||||| ||| | |||||||||| | | |||||||||| |  |||||||||||||||    
T  44055980 taaaaacgtggaaaaaaagtaatcttattttctaataaatgcaaaagacttaaattttatcattttctaaaagttcaagtag 44056061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 52829055 - 52829117
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||| ||||| ||||||||| ||||| ||||||| ||| |||| | ||||||||||||||    
T  52829055 taaaaatatggacgaaaagtaattatattatgtaagaaatgtaaaatactaagattttatcat 52829117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 9962021 - 9961940
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 119  Q
    |||||| ||||||| ||||||||  |||| ||||||| ||  |||| ||||||||||||||| ||| |||||||||||||||    
T  9962021 taaaaacgtggacacaaagtaattttattatgtaagaaatataaaatattaagattttatcattctctaaaagttcaagtag 9961940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 8165396 - 8165317
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||||||| | |||||  |||| |||||||| ||||||||| ||||| ||| |||||| ||||||||||||||    
T  8165396 caacaacatagaccaagttaaaaacctggaaaaaaagtattcatattttttaagaaatg-aaaagactaagattttatcat 8165317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 52380580 - 52380524
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    |||||||||| |||| | | |||||||||||||||| ||||||||| || |||||||    
T  52380580 tagaccaaattaaaacgcgcacaaaaagtaatcatagtttgtaagaaatacaaaaga 52380524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 13325525 - 13325604
Alignment:
Q  19 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||||||||  |||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  13325525 ttctcaactaagtagaccaaattaaaacgtgaacaaaaagtaatcatattttgtaagaaatgcaaaagactaaaatttta 13325604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 41346154 - 41346218
Alignment:
Q  37 aaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca 101  Q
    |||||| |||||||||||||||||||| ||||||| |||| || ||||||||| |||||||||||    
T  41346154 aaataataatgtggacaaaaagtaatcttattttgaaagaaatacaaaagattgagattttatca 41346218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 1271357 - 1271435
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| ||| ||||||||| | ||||||||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  1271357 tccaacaatgttctcaactgcgtagaccaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 1271435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 22811058 - 22810970
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||| ||| ||| ||||||| |||||||||| |||| ||||||||||||| ||  |||||||||||| || ||||||||||| ||||||    
T  22811058 tccaacaatgttcacaactacgtagaccaaattaaaacgtggacaaaaagt-attttattttgtaagaaatacaaaagattaaaatttta 22810970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 40436665 - 40436746
Alignment:
Q  22 tcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||||||||||| | |||||  ||||||||| ||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  40436665 tcaacaacatagaccaagttaaaaacatggacaaaatgtaatcatattttataagaaatgaaaaagactaagattttatcat 40436746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 11219180 - 11219259
Alignment:
Q  19 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||||||||  ||||||||| |||| || |||||||||||||| |||||||||||| || || |||| ||| ||||||    
T  11219180 ttctcaactacgcagaccaaattaaaacgtagacaaaaagtaatcctattttgtaagaaatacacaagactaaaatttta 11219259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 9012671 - 9012609
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| || |||||||||||||| |||||||||||| ||||||||   ||||||||||||||    
T  9012671 taaaaacgttgacaaaaagtaatcttattttgtaagaaatgcaaaaagctaagattttatcat 9012609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 28441716 - 28441778
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| ||||| ||||||||||| |||||| ||||| |||||||||| ||| ||||||||||    
T  28441716 taaaaacgtggaaaaaaagtaatcgtattttttaagaaatgcaaaagactaaaattttatcat 28441778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 4785461 - 4785533
Alignment:
Q  15 aatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||||| ||||||| ||||| |||| |||| |||||||||||||||||  | ||||||||| || |||||||    
T  4785461 aatattcccaactacgtagactaaattaaaacgtggacaaaaagtaatccaactttgtaagaaatacaaaaga 4785533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 12193308 - 12193252
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||| || |||||||    
T  12193308 tagaccaaattaaaacgtgcataaaaagtaatcatattttgtaagaaatacaaaaga 12193252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 12437736 - 12437680
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    |||||||||| |||| ||| | |||||||||||||||||||||||| || |||||||    
T  12437736 tagaccaaattaaaacgtgcataaaaagtaatcatattttgtaagaaatacaaaaga 12437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 102
Target Start/End: Complemental strand, 38926279 - 38926207
Alignment:
Q  31 tagaccaaataaaaatg-tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||||||||||||   |||||||||| ||||| |||| || |||| ||| |||||||||||||||||||||    
T  38926279 tagaccaaataaaaaacatggacaaaaaataatcttattgtgcaagaaatgtaaaagattaagattttatcat 38926207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 24681934 - 24681867
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||||||| |||| |||||||||||||| || |||||||||||| ||  |||||| ||| ||||||    
T  24681934 tagaccaaattaaaacgtggacaaaaagtactcctattttgtaagaaatataaaagactaaaatttta 24681867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 31477975 - 31477928
Alignment:
Q  51 acaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||| |||||| |||||| ||||| |||||||||||||||||||||    
T  31477975 acaaaacgtaatcgtattttctaagaaatgcaaaagattaagatttta 31477928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 14185721 - 14185685
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatc 63  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14185721 acatagaccaaattaaaaatgtggacaaaaagtaatc 14185685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 30253589 - 30253553
Alignment:
Q  36 caaataaaaatgtggacaaaaagtaatcatattttgt 72  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  30253589 caaattaaaatgtggacaaaaagtaatcctattttgt 30253553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 22701191 - 22701114
Alignment:
Q  22 tcaactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 99  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||| |||||||||| |||||||||||    
T  22701191 tcaactacatagaccaaataaaaaacgtgcacaaaaagtaatcatatttt-taagaaatgcaaaagaataagattttat 22701114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 10338675 - 10338586
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||| ||| ||| ||||||| ||||| |||| |||| |||||||||||||||||||||||||||||| || ||||||| ||| ||||||    
T  10338675 tccaacaatgttcccaactacttagacaaaattaaaacgtggacaaaaagtaatcatattttgtaagagatacaaaagactaaaatttta 10338586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 11834332 - 11834243
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||| ||| ||| ||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||| ||| ||||||    
T  11834332 tccaacaatgttcccaattacgtagaccaaattaaaatctggacaaaaagtaatcatattttgtaagaaatacaaaagactaaaatttta 11834243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 30855324 - 30855404
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||||||||| |||||||  |||||||| |||||||||||||| ||| |||||||| ||||||||||||||||    
T  30855324 caacaacatagaccaaattaaaaatgcagacaaaaaataatcatattttgtgagaaatgcaaaacattaagattttatcat 30855404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 2734571 - 2734645
Alignment:
Q  28 acatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||||| ||||| |||| ||||||||||| |||| ||||||| ||| |||||| ||||||||||||||    
T  2734571 acatagaccaaattaaaatatggataaaaagtaatcttattatgtaagaaatgtaaaagactaagattttatcat 2734645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 23729602 - 23729676
Alignment:
Q  24 aactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||||| ||||||||  ||| ||| |||||||||||||||||||||||||| || ||||||| ||||||||||    
T  23729602 aactacatggaccaaatttaaacgtgaacaaaaagtaatcatattttgtaagaaatacaaaagactaagatttta 23729676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 26524785 - 26524716
Alignment:
Q  28 acatagaccaaataaaaa-tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    ||||||||||||| |||| ||||||||||||||||| ||||| ||||||| ||| |||||||||||||||    
T  26524785 acatagaccaaattaaaactgtggacaaaaagtaattatattatgtaagaaatgtaaaagattaagattt 26524716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 48643016 - 48643096
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||||||| | |||||  ||||||||| ||||||||||||||||||| || ||||||| ||||||||||||||    
T  48643016 caacaacatagaccaagttaaaaacatggacaaaacgtaatcatattttgtaagaaatacaaaagactaagattttatcat 48643096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 49012278 - 49012358
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||| ||| |||| ||||| ||||||||||||||||  |||||||||||| ||||||||||  |||||||||||||    
T  49012278 caactacatggactaaattaaaaacgtggacaaaaagtaattctattttgtaagaaatgcaaaagaacaagattttatcat 49012358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 32237900 - 32237975
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||||| ||||| |||||||||| ||||||||||| ||||| |  |||||||||||||| |||||||||    
T  32237900 acatagaccaaattaaaaacgtggacaaaatgtaatcatattatgtaaaaattgcaaaagattaagcttttatcat 32237975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 8118103 - 8118057
Alignment:
Q  53 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 99  Q
    |||||||||||||||||||||||| || |||||||||||||||||||    
T  8118103 aaaaagtaatcatattttgtaagaaatacaaaagattaagattttat 8118057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 23675624 - 23675686
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| ||||||||||||||||| |||| ||||| | ||| |||||||||||||||||||||    
T  23675624 taaaaacgtggacaaaaagtaatcctattatgtaataaatgtaaaagattaagattttatcat 23675686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 22298747 - 22298840
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||| ||| |||||||||||||||||| |||| ||| ||||||||||||| |||||  ||||| || ||||||| ||| |||| |||||    
T  22298747 tccaacaatgttcccaactacatagaccaaattaaaacgtgaacaaaaagtaatcctatttgataagaaatacaaaagactaaaatttaatcat 22298840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 33434326 - 33434420
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||| || ||||||||||||||||||| |||||  || ||||||| ||||  |||||||||| | |||||||||| || |||||||||||    
T  33434326 tccaacaatgttttcaactacatagaccaaattaaaaacatgcacaaaaaataattctattttgtaacaaatgcaaaagagtatgattttatcat 33434420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 96
Target Start/End: Complemental strand, 21237621 - 21237553
Alignment:
Q  29 catagaccaaa-taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    ||||||||||| ||||| ||||||||||||||||| || || ||||||| ||| |||||| ||||||||    
T  21237621 catagaccaaaataaaattgtggacaaaaagtaattatgttatgtaagaaatgtaaaagactaagattt 21237553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 46147444 - 46147516
Alignment:
Q  28 acatagaccaaataaaaat-gtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttat 99  Q
    ||||| ||||||||||||  ||||||||||||||||  |||| ||||||| ||| |||||| |||||||||||    
T  46147444 acataaaccaaataaaaaacgtggacaaaaagtaattctattatgtaagaaatgtaaaagactaagattttat 46147516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 7697517 - 7697585
Alignment:
Q  23 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaa 91  Q
    ||||||| |||||||||| |||| ||||| |||||||||||  | ||||||||| ||  ||||||||||    
T  7697517 caactacgtagaccaaattaaaacgtggaaaaaaagtaatccaactttgtaagaaattaaaaagattaa 7697585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 20334820 - 20334876
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| |||| |||| ||| ||||||||||||| |||||||||||| || |||||||    
T  20334820 tagactaaattaaaacgtgcacaaaaagtaatcctattttgtaagaaatacaaaaga 20334876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 23032928 - 23033008
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tcttaaaagttcaagtag 119  Q
    |||||||||| ||  ||||||||  |||| ||||||| ||  |||||||||||||||||||| |||  |||||||||||||    
T  23032928 taaaaatgtgaacgcaaagtaattctattatgtaagaaatataaaagattaagattttatcattctctaaagttcaagtag 23033008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 34881156 - 34881094
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||||||||||||||||||||| |||||||||||| |||||||| | ||||||||||||||    
T  34881156 taaaaatgtggacaaaaagtaatcgtattttgtaagaaatgcaaaaaactaagattttatcat 34881094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 33792864 - 33792953
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||| ||| ||||||||||| ||||| |||| |||| |||||||||||| ||||||||||||||||| ||  |||||||||| ||||||    
T  33792864 tccaacaatgttctcaactacgtagactaaattaaaacgtggacaaaaagcaatcatattttgtaagaaataaaaaagattaaaatttta 33792953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 7487170 - 7487068
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcatct--taaaagttcaagtag 119  Q
    |||| ||||||||||||| ||||| || |||||||| |||||||||| | ||||| ||| | ||||||||||||||||||| |  |||||||||||||||    
T  7487170 caacaacatagaccaaattaaaaacgtagacaaaaattaatcatattctctaagaaatgtataagattaagattttatcattttctaaaagttcaagtag 7487071  T
Q  120 tac 122  Q
    |||    
T  7487070 tac 7487068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 10090445 - 10090523
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| ||| ||| ||||||| |||||||||| ||||| |||||||||||||||| |||||||||||| || |||||||    
T  10090445 tccaataatgttcccaactacgtagaccaaattaaaatttggacaaaaagtaatcctattttgtaagaaatacaaaaga 10090523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 25495320 - 25495394
Alignment:
Q  24 aactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||| |||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||| ||| ||||||    
T  25495320 aactacgtagaccaaattaaaacgtggacaaaaagtaatcttattttgtaagaaatacaaaagactaaaatttta 25495394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 40331326 - 40331237
Alignment:
Q  33 gaccaaataaaaa-tgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagtag 119  Q
    ||||||||||||| |||||| ||||| ||||| |||||| ||||| |||||||||| ||||||||||||| ||| |||||||||||||||    
T  40331326 gaccaaataaaaaatgtggataaaaaataatcttattttttaagaaatgcaaaagactaagattttatcattctctaaaagttcaagtag 40331237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 34111620 - 34111545
Alignment:
Q  28 acatagaccaaat---aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatc 100  Q
    |||||||||||||   ||||| |||||||||||||||||||||| ||||||| ||| ||||||  |||||||||||    
T  34111620 acatagaccaaattaaaaaaacgtggacaaaaagtaatcatattatgtaagaaatgtaaaagacaaagattttatc 34111545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 2589211 - 2589287
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaa-gtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||||||| ||||||||||||||||| |||||  |||| ||||||| ||| |||||||||||||||||||||    
T  2589211 acatataccaaattaaaaatgtggacaaaaaagtaattctattatgtaagaaatgtaaaagattaagattttatcat 2589287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 12378931 - 12378856
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||| ||||||| ||||||||||||||||| ||||  |||||||||||| ||| |||| | ||||||||||||||    
T  12378931 acataaaccaaattaaaaatgtggacaaaaattaattctattttgtaagaaatgtaaaatactaagattttatcat 12378856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 14652692 - 14652767
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||| | |||||  ||||||| | |||||| |||||||||||| || ||||||||||||||||||||||    
T  14652692 acatagaccaacttaaaaacatggacaatatgtaatcctattttgtaagaaattcaaaagattaagattttatcat 14652767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 40692714 - 40692761
Alignment:
Q  51 acaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||||||||||||||||||||||| || ||||||| ||||||||||    
T  40692714 acaaaaagtaatcatattttgtaagaaatacaaaagactaagatttta 40692761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Original strand, 18845751 - 18845820
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    ||||||| ||||| ||||||||||||| ||||||||  |||||||||||| ||| |||||| ||||||||    
T  18845751 acatagatcaaattaaaaatgtggacataaagtaattctattttgtaagaaatgtaaaagactaagattt 18845820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 102
Target Start/End: Complemental strand, 40109438 - 40109393
Alignment:
Q  58 gtaatcatattttgtaagatatgcaaaaga-ttaagattttatcat 102  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||    
T  40109438 gtaatcatattttgtaagagatgcaaaagatttaagattttatcat 40109393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 11402826 - 11402906
Alignment:
Q  23 caactacatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||||||| | |||||  |||||||||  |||||||||||||||||| | | |||||| ||||||||||||||    
T  11402826 caacaacatagaccaagttaaaaacatggacaaaacataatcatattttgtaagaaaagtaaaagactaagattttatcat 11402906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 34087635 - 34087703
Alignment:
Q  19 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    |||| |||||| |||||||||| ||||  || ||||||||||||||||||||| |||| || |||||||    
T  34087635 ttctgaactacgtagaccaaattaaaacatgcacaaaaagtaatcatattttgaaagaaatacaaaaga 34087703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 36567930 - 36568046
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga-ttaagattttatca-tct-t 105  Q
    ||||| ||| ||| ||||||| ||||||||||  ||| |  ||| ||||||||||||||||||||||| || ||||||| | || ||||||||| ||| |    
T  36567930 tccaacaatgttcccaactacgtagaccaaatttaaacgcagaccaaaagtaatcatattttgtaagaaatacaaaagactaaatattttatcattctct 36568029  T
Q  106 aaaagttcaagtagtac 122  Q
    || ||||||||||||||    
T  36568030 aagagttcaagtagtac 36568046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Complemental strand, 28224713 - 28224639
Alignment:
Q  24 aactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||| |||||||||| |||||||||||||| ||||    |||||||||||| || ||||||| ||| ||||||    
T  28224713 aactacgtagaccaaattaaaatgtggacaaatagtagatttattttgtaagaaatacaaaagactaaaatttta 28224639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 4414445 - 4414526
Alignment:
Q  18 attctcaactacatagaccaaata-aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    |||||||||||||| || |||||  |||| ||| |||||  ||||||||||||||||| | || ||||||| ||||||||||    
T  4414445 attctcaactacatggaacaaatttaaaacgtgaacaaatggtaatcatattttgtaaaaaatacaaaagactaagatttta 4414526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 41455110 - 41455155
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaaga 76  Q
    ||||||||||  ||| | ||||||||||||||||||||||||||||    
T  41455110 tagaccaaatttaaacgcggacaaaaagtaatcatattttgtaaga 41455155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 6400051 - 6400126
Alignment:
Q  23 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagatttta 98  Q
    ||||||| |||||||||| |||| ||||||||||||||||| |||||||||||| || ||||||| ||| ||||||    
T  6400051 caactacgtagaccaaattaaaacgtggacaaaaagtaatcttattttgtaagaaatacaaaagactaaaatttta 6400126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 13532103 - 13532049
Alignment:
Q  48 tggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||  |||||| |||||||||||| |||||||||||||||||||||||||    
T  13532103 tggacaaatcgtaatcctattttgtaagaaatgcaaaagattaagattttatcat 13532049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 22414018 - 22414095
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaag 86  Q
    ||||| ||| ||| ||||||||||||||| || |||| |||||||||||||||||  ||||||||||| || ||||||    
T  22414018 tccaacaatgttcccaactacatagaccagattaaaacgtggacaaaaagtaatctcattttgtaagaaatacaaaag 22414095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 31945295 - 31945218
Alignment:
Q  19 ttctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    ||||||||||| |||||||||| |||| ||||||||||| |||||| | ||||||||| || ||||||| ||| ||||    
T  31945295 ttctcaactacgtagaccaaattaaaacgtggacaaaaattaatcaaactttgtaagaaatacaaaagactaaaattt 31945218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 20500794 - 20500869
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||| | |||||  ||||||||| ||||   |||||||||||| |||||||||||||||||||||||||    
T  20500794 acatagaccaagttaaaaacatggacaaaacgtaagtttattttgtaagaaatgcaaaagattaagattttatcat 20500869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 7169928 - 7169872
Alignment:
Q  31 tagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| |||| |||| ||||||||||| |||||||||||||||||| || |||||||    
T  7169928 tagactaaattaaaacgtggacaaaaaataatcatattttgtaagaaatacaaaaga 7169872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 17306595 - 17306670
Alignment:
Q  28 acatagaccaaat-aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||| |||||| |||||| |||||||||||||||  |||| ||||||| ||| |||||| |||||||| |||||    
T  17306595 acataggccaaattaaaaatatggacaaaaagtaattctattatgtaagaaatgtaaaagactaagatttcatcat 17306670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 4563109 - 4563163
Alignment:
Q  42 aaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    |||||||||||||||||||||| |||| | ||| | ||| |||||||||||||||    
T  4563109 aaaatgtggacaaaaagtaatcctattatttaataaatgtaaaagattaagattt 4563163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 8064737 - 8064799
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||||||||||||||||||||||  |||| ||||||| ||| ||| || |||||||| |||||    
T  8064737 taaaaatgtggacaaaaagtaattctattatgtaagaaatgtaaacgactaagatttcatcat 8064799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 87
Target Start/End: Original strand, 13092255 - 13092289
Alignment:
Q  53 aaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||||||||| |||||||||||||||||||||||    
T  13092255 aaaaagtaatcctattttgtaagatatgcaaaaga 13092289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 14940409 - 14940349
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatc 100  Q
    |||||| ||| |||||||||||| ||||| ||||||| ||| |||| | ||||||||||||    
T  14940409 taaaaacgtgaacaaaaagtaattatattatgtaagaaatgtaaaacactaagattttatc 14940349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 11377510 - 11377434
Alignment:
Q  27 tacatagaccaaa-taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||| ||| ||||| |||||||||||| ||||| |||| ||||||| || ||||||| ||||||||||||||    
T  11377510 tacatagactaaactaaaattgtggacaaaaaataatcctattctgtaagaaatacaaaagactaagattttatcat 11377434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 30514777 - 30514697
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatca-tct-taaaagttcaagta 118  Q
    |||||| ||||||||||| |||| ||||| || |||| || ||||||||||||||||||||| ||| ||||||||||||||    
T  30514777 taaaaacgtggacaaaaactaataatattctgcaagaaatacaaaagattaagattttatcattctctaaaagttcaagta 30514697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 15320414 - 15320345
Alignment:
Q  53 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat---cttaaaagttcaagtag 119  Q
    |||||||||||||||||||||||| || ||||||| |||||||||| |||   || ||||||||||||||    
T  15320414 aaaaagtaatcatattttgtaagaaatacaaaagactaagattttaacattcactaaaaagttcaagtag 15320345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 21734343 - 21734276
Alignment:
Q  35 ccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    |||| ||||||| ||||||||| ||||||||||| ||||||| ||| |||||| ||| ||||||||||    
T  21734343 ccaattaaaaatatggacaaaaggtaatcatattctgtaagaaatgtaaaagaataatattttatcat 21734276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 1331241 - 1331321
Alignment:
Q  41 aaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat--cttaaaagttcaagtag 119  Q
    ||||| ||||||||||||||||  |||| ||||||| ||| |||||| ||||||||||| ||   ||||||||||||||||    
T  1331241 aaaaacgtggacaaaaagtaattctattatgtaagaaatgtaaaagactaagattttattattctttaaaagttcaagtag 1331321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 10242563 - 10242514
Alignment:
Q  53 aaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||||||||| |||||||||| |||||||| |||| |||||||||||    
T  10242563 aaaaagtaatcatgttttgtaagagatgcaaaatattatgattttatcat 10242514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 11678226 - 11678290
Alignment:
Q  23 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||||| |||| |||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  11678226 caactacgtagagcaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 11678290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 11695704 - 11695768
Alignment:
Q  23 caactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||||| |||| |||||  ||| | |||||||||||||||||||||||||||| || |||||||    
T  11695704 caactacgtagagcaaatttaaacgcggacaaaaagtaatcatattttgtaagaaatacaaaaga 11695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 5862536 - 5862458
Alignment:
Q  9 tccaagaatattctcaactacatagaccaaataaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaaga 87  Q
    ||||| ||| ||||||||||  |||||||||| ||||  |||| |||||||||||  ||||||||||| || |||||||    
T  5862536 tccaacaatgttctcaactaagtagaccaaattaaaacatggataaaaagtaatccaattttgtaagaaatacaaaaga 5862458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 17762994 - 17763050
Alignment:
Q  40 taaaaatgtggacaaaaagtaatcatattttgtaagatatgcaaaagattaagattt 96  Q
    |||||||||||||||||||||||| |||| | ||||| ||| |||||| ||| ||||    
T  17762994 taaaaatgtggacaaaaagtaatcctattatataagaaatgtaaaagactaacattt 17763050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 44085744 - 44085796
Alignment:
Q  50 gacaaaaagtaatcatattttgtaagatatgcaaaagattaagattttatcat 102  Q
    ||||||| |||||| |||||||||||| || ||||||| | ||||||||||||    
T  44085744 gacaaaacgtaatcctattttgtaagaaatacaaaagactgagattttatcat 44085796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University