View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19841_low_44 (Length: 250)
Name: NF19841_low_44
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_44 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 38568327 - 38568078
Alignment:
| Q |
1 |
acaccggacacaaatttaatgtgaagtgtctactacatagctttgaatttatttttctgaatgaaggtttcattttatgtttgaaaaaacaggttgggaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568327 |
acaccggacacaaatttaatgtgaagtgtctactacatagctttgaatttatttttctgaatgaaggtttcattttatgtttgaaaaaacaggttgggaa |
38568228 |
T |
|
| Q |
101 |
atttctgcagctaatagcaacatttgttggcggttttgtgatagcatttagcagaggatggcttcttactgttgtattgatgtcaacacttccacttctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568227 |
atttctgcagctaatagcaacatttgttggcggttttgtgatagcatttaccagaggatggcttcttactgttgtattgatgtcaacacttccacttctt |
38568128 |
T |
|
| Q |
201 |
gttgtgtcgggtgctgccatggctgtaatcataggcaggatggcttctaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38568127 |
gttgtgtcgggtgctgccatggctgtaatcataggcaggatggcttctaa |
38568078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 62 - 250
Target Start/End: Complemental strand, 38527125 - 38526937
Alignment:
| Q |
62 |
tgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttagcagaggatgg |
161 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||| |
|
|
| T |
38527125 |
tgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtgg |
38527026 |
T |
|
| Q |
162 |
cttcttactgttgtattgatgtcaacacttccacttcttgttgtgtcgggtgctgccatggctgtaatcataggcaggatggcttctaa |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
38527025 |
cttcttactgttgttatgatgtcaacacttccatttcttgttgtgtcaggtgctgccatggctgttatcataggcagaatggcttctaa |
38526937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University