View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_45 (Length: 247)
Name: NF19841_low_45
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10201979 - 10201749
Alignment:
| Q |
1 |
tgcgtaggctccaagcaacagcctcgcggtcatccggccctccnnnnnnnngtgttgcaacattttgaatggtttcagattctattagttccgagaaacc |
100 |
Q |
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| T |
10201979 |
tgcgtaggctccaagcaacagcctcgcggtcatccggccctccaaaaaaaagtgttgcaacattttgaatggtttcagattctattagttccgagaaacc |
10201880 |
T |
|
| Q |
101 |
aaatgacgtagtaagtcctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10201879 |
aaatgatgtagtaagtcctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctt |
10201780 |
T |
|
| Q |
201 |
tcaagttttccatcgattcgttgatgcttgt |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10201779 |
tcaagttttccatcgattcgttgatgcttgt |
10201749 |
T |
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Back To:
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Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 51741065 - 51740951
Alignment:
| Q |
117 |
cctctttctataattacaccgacagaacaaggtgcatgcctaagaaccttctgattagtaatccttataccttcttttccgctttcaagttttccatcga |
216 |
Q |
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|||||||| ||||| ||||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| | ||| ||||| | |
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| T |
51741065 |
cctctttcgataataacacctactgaacaaggtgcgtgtctaagaaccttttgattagtaatccttataccttcttttccactttctaatttaccatcaa |
51740966 |
T |
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| Q |
217 |
ttcgttgatgcttgt |
231 |
Q |
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| T |
51740965 |
ttcgttgatgcttgt |
51740951 |
T |
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