View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_46 (Length: 247)
Name: NF19841_low_46
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 27372152 - 27371909
Alignment:
| Q |
10 |
aatataatgttattttattttgaaatttgaagaaatcaaca-------acatcaaattaggaatagtagtaaaagtttatggtcattcaactcaaaagta |
102 |
Q |
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| T |
27372152 |
aatatcatgttattttattttgaaatttgaagaaatcaacattcaacaacaccaaattaggaatagtagtaaaagtttatggtcagtcaactcaaaag-- |
27372055 |
T |
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| Q |
103 |
ctctaacacc---acacctttacaaatttacatagtagacccaactaccctttaatttcacgtccatacttcaaataaaattttgtaatggctttgtttc |
199 |
Q |
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| T |
27372054 |
-tctaacacctcatcacctttacaaatttacctagtacacccacctaccctttaatttcacgtccatacttcaaacaaaattttgtaatggctctgtatc |
27371956 |
T |
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| Q |
200 |
cctttgtttgttgtcttattgtcataattgtatcccaagccaaagcc |
246 |
Q |
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| T |
27371955 |
cctttgtttgttgtcttattgtcataattgtatcccaagccaaagcc |
27371909 |
T |
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