View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_47 (Length: 241)
Name: NF19841_low_47
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 43578964 - 43578739
Alignment:
| Q |
16 |
tcttcacctcaacactaacctccaaaaatgcacagagctcatcctcctccgccataacacctgactcaatcatatcatcatcaacctcataagctttcat |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578964 |
tcttcacctcaacactaacctccaaaagtgcacagagctcatcctcctccgccataacacctgactcaatcatatcatcatcaacctcataagctttcat |
43578865 |
T |
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| Q |
116 |
agcatcccctctcgcacaaaaaccatacaaagccggaccataagacctcaactttggtgcaattccaactctcttcatctgcttcaacaactcaaatgcc |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578864 |
agcatcccctctcgcacaaaaaccatacaaagctggaccataagacctcaactttggtgcaattccaactctcttcatctgcttcaacaactcaaatgcc |
43578765 |
T |
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| Q |
216 |
atctcaggatcctccttagcagcagc |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
43578764 |
atctcaggatcctccttagcagcagc |
43578739 |
T |
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