View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_48 (Length: 240)
Name: NF19841_low_48
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 29173992 - 29174212
Alignment:
| Q |
1 |
taaatgggatatattggctcattcaaaaagtgtgttacttatatgatttcatcaaactactttgcaataatctgaattagagaataatctaaatcattaa |
100 |
Q |
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| T |
29173992 |
taaatgggatatattggctcattcaaaaagtgtgttacttatatgatttcatcaaactactttgcaataatctgaattagagaataatctaaatcattaa |
29174091 |
T |
|
| Q |
101 |
caggcnnnnnnncgtaaaaacaaacagtaacttttattccattcataatttcttttaaagaagcattaataaattttttattcatttccatacacacgat |
200 |
Q |
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| T |
29174092 |
caggcaaaaaaacgtaaaaacaaacagtaacttttattccattcataatttctttttaagaagcattaataaa-tttttattcatttccatacacacgat |
29174190 |
T |
|
| Q |
201 |
ttattaaaaacaaagcgagcct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
29174191 |
ttattaaaaacaaagcgagcct |
29174212 |
T |
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