View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_5 (Length: 610)
Name: NF19841_low_5
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 11 - 593
Target Start/End: Original strand, 55421279 - 55421861
Alignment:
| Q |
11 |
cagagaacaccgtgtcactcgtaagcacctgcaaatatgtcccgtataatcaactataggcatgttttacagccattacaatgaaagagaaaatattata |
110 |
Q |
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| T |
55421279 |
cagagaacaccgtgtcactcgtaagcacctgcaaatatttcccgtataatcaactataggcatgttttacagccattaaaatgaaagagaaaatattata |
55421378 |
T |
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| Q |
111 |
tgcattaggaatctgtttggtaactagagtaagaatgatgatataagatatatcaaataatagtgttggtcggaccaataggatgtgtttgacattagtt |
210 |
Q |
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| T |
55421379 |
tgcattaggaatctgtttggtaactagagtaagaatgatgatataagatatatcaaataatagtgttggtcggaccaataggatgtgtttgacattagtt |
55421478 |
T |
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| Q |
211 |
ataagatatatcaaactaagattttatcctataactgtgtttgacgtgcatcgacatgagtggctttgggtaaaagccaatggcaatagctccacaatgg |
310 |
Q |
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| T |
55421479 |
ataagatatatcaaactaagattttatcctataactgtatttgacgtgcatcgacatgagtggctttgggtaaaagccaatggcaatagctccacaatgg |
55421578 |
T |
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| Q |
311 |
aaatgtagttatgcagagacacaactgagactattagagcagctgatttgggttaaaacactccattcaagcaatctaaaaataaataagggccaatgta |
410 |
Q |
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| T |
55421579 |
aaatgtagttatgcagagacacaactgagactattagagcagctgatttgggttaaaacactccattcaagcaatctaaaaataaataagggccaatgta |
55421678 |
T |
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| Q |
411 |
acaaaaaatcattgattgataaagcattaaacaggaggagatggtggtgatagaagaattaggaaagaaatgaaatgaataagtacctctgaaaatgcca |
510 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55421679 |
acaaaaaatcgttgattgataaagcattaaacaggaggagatggtggtgatagaagaattaggaaagaaatgaaatgaataagtacctctgaaaatgcca |
55421778 |
T |
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| Q |
511 |
atctgtcagcaacatcatttgtccactcaaaaaagcgggttaactgacgagtgagtcttaaaacggagacgggaactgtagtt |
593 |
Q |
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| T |
55421779 |
atctgtcagcaacatcatttgtccactcaaaaaagcgggttaactgacgagtgagtcttaaaacggagacgggaactgtagtt |
55421861 |
T |
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