View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_52 (Length: 230)
Name: NF19841_low_52
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_52 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 27371499 - 27371722
Alignment:
| Q |
7 |
agatttctcatcacaaaactaagtggttcaatgtacttgtccgttttagttgtagacgttctattaccaaaatattgtgtaggatcagtttccaagctcc |
106 |
Q |
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| T |
27371499 |
agatttctcatcacaaaactaagtggttcaatgtacttgtccgcttcagttgtagacattgtattactaaaatatcgtgtaggatcagtttccaagctcc |
27371598 |
T |
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| Q |
107 |
caagtattgaacgatatgtgtaccttaaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggcaatggaatt |
206 |
Q |
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| T |
27371599 |
caagtattgaacgatatgtgtaccttaaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggcaatggaatt |
27371698 |
T |
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| Q |
207 |
gtttaggtttctacgacactgatt |
230 |
Q |
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| T |
27371699 |
gtttaggtttctacgacactgatt |
27371722 |
T |
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Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 47773135 - 47773038
Alignment:
| Q |
133 |
aaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggcaatggaattgtttaggtttctacgacactgatt |
230 |
Q |
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| T |
47773135 |
aaagtgaaatcaccaccccacacaattgcctctttttggtttggacactgctctctgagataaccaatggaattgtttaggtttgtacgacactgatt |
47773038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 47764745 - 47764648
Alignment:
| Q |
133 |
aaagtgacatcatcaccccacaaaatggcctctttttgatttggacactttgctctaagataggcaatggaattgtttaggtttctacgacactgatt |
230 |
Q |
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| T |
47764745 |
aaagtgaaatcaccaccccacacaatcgcctctttttgatttggacattgttctctaagaaagggaatggtattgtttagctttgcaagacactgatt |
47764648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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