View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_56 (Length: 224)
Name: NF19841_low_56
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 25680323 - 25680270
Alignment:
| Q |
153 |
gcgacgacaacaatgaaagtatgcttcgtgttaatcgcttgtcatcttcattac |
206 |
Q |
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| T |
25680323 |
gcgacgacaacaatgaaagtatgcttcgtgttaatcgctcgtcatcttcattac |
25680270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 24930974 - 24930928
Alignment:
| Q |
11 |
gaagcaaaggaaatattactgcatgaatcaatcaaggtatcagcacc |
57 |
Q |
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| T |
24930974 |
gaagcaatggaaatattactgcatgaatcaatcaaggtatcagcacc |
24930928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 25680465 - 25680419
Alignment:
| Q |
11 |
gaagcaaaggaaatattactgcatgaatcaatcaaggtatcagcacc |
57 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25680465 |
gaagcaatggaaatattactgcatgaatcaatcaaggtatcagcacc |
25680419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 24930817 - 24930761
Alignment:
| Q |
153 |
gcgacgacaacaatgaaagtatgcttcgtg---ttaatcgcttgtcatcttcattac |
206 |
Q |
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| T |
24930817 |
gcgacgacaacaatgaaagtatgcttcgtgtaattaatcgctcatcatcttcattac |
24930761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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