View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_6 (Length: 610)
Name: NF19841_low_6
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 593
Target Start/End: Original strand, 51114453 - 51115056
Alignment:
| Q |
1 |
aatttaattcttgattatctctttcnnnnnnnagatatctgagaaaatattctgctaattattcatgtccattggtgtttgaaccttatttatgtgttgg |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51114453 |
aatttaattcttgattatctctttctttttttagatatctgagaaaatattctgcaaattattcatgtccattggtgtttgaaccttatttatttgttgg |
51114552 |
T |
|
| Q |
101 |
attagaagttagatagaatgcatgcttgaaatgt----------agttcatttcacacggcaaataaggtacaaaacaaaatgaaacctacattaaaatg |
190 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51114553 |
attagaagttagatagaatgcatgcttgaaatgtgtatgtctgtagttcatttcacacggcaaataagatacaaaacaaaatgaaacctacattaaaatg |
51114652 |
T |
|
| Q |
191 |
tgacatcggagtgtgttcttctcaagtctctggtttgatcctctt-agtgccaattttggtgtgttagtttgacttcttcttnnnnnnnntgtgaaacta |
289 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51114653 |
tgacatcggagtgtgttcttctcaagtctctagtttgatcctcttcagtgccaattttggtgtgttagtttgacttcttcttaaaaaaaatgtgaaacta |
51114752 |
T |
|
| Q |
290 |
tcttaaaactaatcaacattcttctaattcctcgttgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttatt |
389 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114753 |
tcttaaaactaatcaatattcttctaattcctcgtcgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttatt |
51114852 |
T |
|
| Q |
390 |
ttgaaattatgctttgtctgatattggtttttgaagctattgacaaactactcattcttttctgcattgattcgagtgtttaattagttttaatatggtc |
489 |
Q |
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| T |
51114853 |
ttgaaattatgctttgtctgatattggtttttgaaactattgactgactactcattcttttctgcattgattcgagtgtttaattagttttaatatggtc |
51114952 |
T |
|
| Q |
490 |
aataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggttg |
589 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51114953 |
aataacaaggtataatcaaaatctagtagcaaccttagatagtgttgaatgcacgttagttatcaaaaaggaaatcctgagtttggaaattaggtggttg |
51115052 |
T |
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| Q |
590 |
ttct |
593 |
Q |
| |
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|||| |
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| T |
51115053 |
ttct |
51115056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 332 - 415
Target Start/End: Original strand, 5768822 - 5768905
Alignment:
| Q |
332 |
aaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattg |
415 |
Q |
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|||||||||| |||| ||||||||||||||| || | || ||||||||||||||||||||||| |||| |||||| |||||||| |
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| T |
5768822 |
aaagttccatggaaatttggcatctttctgcttatggctacatattatgtttcttattttgaagttatcctttgtttgatattg |
5768905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 468
Target Start/End: Original strand, 1118657 - 1118800
Alignment:
| Q |
324 |
ttgtgttgaaagttccatcgaaaattggcatctttctgcatacgcctgcatattatgtttcttattttgaaattatgctttgtctgatattggtttttga |
423 |
Q |
| |
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||||||||| | |||||| |||||| |||||||||||| | || |||||||||||||||||| | ||||||||||||||||| |||| |||||||| |
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| T |
1118657 |
ttgtgttgataattccatggaaaatatgcatctttctgctgagacccacatattatgtttcttattcttaaattatgctttgtctggtatt-gtttttga |
1118755 |
T |
|
| Q |
424 |
agctattgacaaactactcattcttttctgcattgattcgagtgt |
468 |
Q |
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|| ||||||| | |||| ||||| ||||| |||||| |||||| |
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| T |
1118756 |
agatattgactacgtactgtttcttctctgctttgatttgagtgt |
1118800 |
T |
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