View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19841_low_8 (Length: 530)
Name: NF19841_low_8
Description: NF19841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19841_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 34 - 515
Target Start/End: Complemental strand, 21055241 - 21054760
Alignment:
| Q |
34 |
tacaagattctattcatcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttcatcat |
133 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |
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| T |
21055241 |
tacaagattctattcattataaaatcatattattttacatcagaattcagaatcacaaacttcttatacgatcaaatgtctcagtagacactttcatcat |
21055142 |
T |
|
| Q |
134 |
tcccgagttacaaaatgaagatgctaatgaattacatacagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagcttcatat |
233 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055141 |
ccctgagttacaaaatgaagatgctaatgaattccatacagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagcttcatat |
21055042 |
T |
|
| Q |
234 |
tgcctacctaaggagcaaagaccctcaatgagcgaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggcttgcct |
333 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21055041 |
tgcctacctaaggagcaaagaccctcaatgagcaaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggcttgcct |
21054942 |
T |
|
| Q |
334 |
caagatactttctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaagctctc |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21054941 |
caagatactttctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcagccatgcaatttacctttttcgacatcttgttcaagctctc |
21054842 |
T |
|
| Q |
434 |
gagcactgatgttgaatttcctacaccacccaggtttttcaagagaatagtatacactgtagcatttggtagacaattgact |
515 |
Q |
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| T |
21054841 |
gagcactgatgttgaatttcctacaccacccaggtttttcaagagaatagtatacactgtagcatttggtagacaattgact |
21054760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 30 - 515
Target Start/End: Original strand, 26366676 - 26367161
Alignment:
| Q |
30 |
gtagtacaagattctattcatcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacactttca |
129 |
Q |
| |
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||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26366676 |
gtagttcaagattctattcattataaaatcataatattttacatcagaatccagaatcacaaactttttatgcgattaaatgtctcagcagacactttca |
26366775 |
T |
|
| Q |
130 |
tcattcccgagttacaaaatgaagatgctaatgaattacatacagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagcttc |
229 |
Q |
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|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26366776 |
tcatccccgagttacaaaatgaagatgctaatgaattccaaacagaaatttcaggaagctttccttggcttatcatgtcctctaaccacataacagcttc |
26366875 |
T |
|
| Q |
230 |
atattgcctacctaaggagcaaagaccctcaatgagcgaattgtaagtattggcacaaggccaatatgatttaattgacatttgctccaaaagttggctt |
329 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||| | || ||| |||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26366876 |
atattgcctacctaaggaacaaagaccctcaatgagcaaattgtaactgtttgcagaaggccaatatgatttaattgacatttgttccaaaagttggctt |
26366975 |
T |
|
| Q |
330 |
gcctcaagatactttctctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaagc |
429 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26366976 |
gcctgaagatactttccctcgcgacaaagcatttctagtaaaatgcaataagtttctttgtcggccatgcaatttacctttttcgacatcttgttcaagc |
26367075 |
T |
|
| Q |
430 |
tctcgagcactgatgttgaatttcctacaccacccaggtttttcaagagaatagtatacactgtagcatttggtagacaattgact |
515 |
Q |
| |
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| |||||||| || || ||||||||||||| || | ||||||||||||||||||||||||| ||||||| || |||||||||||| |
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|
| T |
26367076 |
tttcgagcaccgacgtcgaatttcctacactacgtatgtttttcaagagaatagtatacactctagcattaggcagacaattgact |
26367161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 28 - 228
Target Start/End: Original strand, 26364128 - 26364328
Alignment:
| Q |
28 |
tggtagtacaagattctattcatcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagcagacacttt |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26364128 |
tggtagtacaagattctattcatcataaaatcataatattttacatcagaattcagaatcacaaacttcttatgcgattaaatgtctcagccgacacttt |
26364227 |
T |
|
| Q |
128 |
catcattcccgagttacaaaatgaagatgctaatgaattacatacagaaatttcaggaagctttccttggcttatcatgtcctccaaccacataacagct |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
26364228 |
catcattcccgagttacaaaatgaagatgctaatgaattccatacagaaatttcaggaagctttccttggcttatcatgtcttccaaccacataagagct |
26364327 |
T |
|
| Q |
228 |
t |
228 |
Q |
| |
|
| |
|
|
| T |
26364328 |
t |
26364328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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