View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19842_high_10 (Length: 363)
Name: NF19842_high_10
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 26097296 - 26096956
Alignment:
| Q |
9 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatatcagagacaatcgcagttaaacgagagattattgttaccctt |
108 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
26097296 |
aagaaccagtcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatattagagaaaatcgcagttaaacgagagattatagttaccctt |
26097197 |
T |
|
| Q |
109 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatgg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
26097196 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattg |
26097097 |
T |
|
| Q |
209 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
26097096 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggtcaacggcgcggctgtctccac |
26096997 |
T |
|
| Q |
309 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26096996 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
26096956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 26120583 - 26120243
Alignment:
| Q |
9 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatatcagagacaatcgcagttaaacgagagattattgttaccctt |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||||||||||||||| || ||||||||| |
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|
| T |
26120583 |
aagaaccaatcctattgttgctcctgatgaatccgtgaacccgagattggcaaatttattagagaaaatcgcagttaaacgagagatcatagttaccctt |
26120484 |
T |
|
| Q |
109 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatgg |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
26120483 |
gcaaactcaaatgtgaaagagatcctcgagatctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattg |
26120384 |
T |
|
| Q |
209 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccac |
308 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||| |
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|
| T |
26120383 |
caaagttttgtgaatcgaatcaagtcccattttacaaaagagacccggataatggtattgatactgttggaaaaattccaaacggcgaggctgtctccag |
26120284 |
T |
|
| Q |
309 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
349 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26120283 |
tctcaaattccgtattctaagagaatttttgcagttgggat |
26120243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 26085021 - 26084681
Alignment:
| Q |
9 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatatcagagacaatcgcagttaaacgagagattattgttaccctt |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| | ||||||| ||||||||||| ||| ||||| ||||||||||||||||||||| || ||||||||| |
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|
| T |
26085021 |
aagaaccaatcctactgttgctcctgatgaattcttgaacccgagattggcaaatttattagagaaaatcgcagttaaacgagagatcatagttaccctt |
26084922 |
T |
|
| Q |
109 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatgg |
208 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
26084921 |
gcaaactcaaatgtgaaggcaatgctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagattg |
26084822 |
T |
|
| Q |
209 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccac |
308 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
26084821 |
caaaattttgtgaatctaataaagtcccattttaccaaagagacccggataatgatattgatactgttggaaaaattccaaacggtggggctgtctccgg |
26084722 |
T |
|
| Q |
309 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
349 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26084721 |
gcttaaatttcgtattctaagagaatttttgcagttgggat |
26084681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 26065296 - 26064956
Alignment:
| Q |
9 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatatcagagacaatcgcagttaaacgagagattattgttaccctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| | |||||||||||||| |||||| || ||| ||||| |
|
|
| T |
26065296 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccgagattggcaaatatattagataaaatcgcagttaaacaagagatcatagttgccctt |
26065197 |
T |
|
| Q |
109 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatgg |
208 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
26065196 |
gcaaactccaatgttaaggagatcctggaagtctggttcactaatatcaagagagttggtatatctaattatctagttgttgccttagacgatgagattg |
26065097 |
T |
|
| Q |
209 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccac |
308 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||| ||||| |||||||||||| | ||| | ||||||||||| |
|
|
| T |
26065096 |
caaagttttgtgaattgaatcaagtcccattttacaaaagagacccggataatggtattgatgctgttggaaaaagaggaaagagaacggctgtctccgg |
26064997 |
T |
|
| Q |
309 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
349 |
Q |
| |
|
||| ||||||| ||||||||| |||||||||||| |||||| |
|
|
| T |
26064996 |
gcttaaatttcgtattctaagggaatttttgcagctgggat |
26064956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 26127240 - 26126900
Alignment:
| Q |
9 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatatcagagacaatcgcagttaaacgagagattattgttaccctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||| ||||| || |||||||| || ||| ||||| |
|
|
| T |
26127240 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccgagattggcaaatttattagagaaaattgcagtaaaccgagagatcatagttgccctt |
26127141 |
T |
|
| Q |
109 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatgg |
208 |
Q |
| |
|
|||||||| ||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
26127140 |
gcaaactccaatgttaaggaaaccctcgaggtctggttcaccaatatcaagagagtcggtatacctaattatttagttgttgccttagacgatgaaattt |
26127041 |
T |
|
| Q |
209 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccac |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||||||||||||| ||| | ||||||||||||||||||| | | | ||||||||||| |
|
|
| T |
26127040 |
caaagttttgtgaatcaaataaagtcccgttttacaaaagagacccggatgatgctattgatactgttggaaaaataggagggagagcggctgtctctgg |
26126941 |
T |
|
| Q |
309 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
349 |
Q |
| |
|
||| ||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
26126940 |
gcttaaatttcgtattttaagagaatttttgcagttgggat |
26126900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 9 - 349
Target Start/End: Complemental strand, 26036648 - 26036308
Alignment:
| Q |
9 |
aagaaccaatcctaatgttgctcctgatgaatccgtgaacccaagattggcaaagatatcagagacaatcgcagttaaacgagagattattgttaccctt |
108 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||| || || | ||| |
|
|
| T |
26036648 |
aagaaccaatcctactgttgttcctgatgaatccgtgaatccaagattggcaaagatattggagaaaatctcagttaaacgagagatcatagtagcactt |
26036549 |
T |
|
| Q |
109 |
gcaaactcaaatgtgaaggagatcctcgaggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttagacgatgagatgg |
208 |
Q |
| |
|
||||| || |||||||||||||| | |||||||||||| | ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
26036548 |
gcaaattccaatgtgaaggagatgttagaggtctggttctcaaatatcaagagagttggtatatctaattatctagttgttgctttagacgatgagattt |
26036449 |
T |
|
| Q |
209 |
caaagttttgtgaatcgaataaagtcccattttaccaaagagacccggacaatggttttgatactgttggaaaaatggcaaacggcgcggctgtctccac |
308 |
Q |
| |
|
|||| ||||||||| | ||| |||||||||||||| |||||||||| || ||||| |||| || |||||||| | | | ||||||||| |
|
|
| T |
26036448 |
caaaattttgtgaaacaaatcaagtcccattttacaaaagagacccagatgatggtattgacaccattggaaaacaaggagggaaccatgctgtctccgg |
26036349 |
T |
|
| Q |
309 |
gctcaaatttcatattctaagagaatttttgcagttgggat |
349 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26036348 |
gcttaaatttcgtattctaagagaatttttgcagttgggat |
26036308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 6773841 - 6773781
Alignment:
| Q |
137 |
aggtctggttcaccaatatcaagagagttggtatacctaattatctagttgttgccttaga |
197 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| ||| |||||||| | |||||||| ||||| |
|
|
| T |
6773841 |
aggtatggttcaccaatatcaagaaggttggcatatctaattatttggttgttgcattaga |
6773781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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