View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_11 (Length: 362)
Name: NF19842_high_11
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 348
Target Start/End: Complemental strand, 45101241 - 45100908
Alignment:
| Q |
15 |
agatattgtccatgatcctttttgttggaatgcttatggagatttggagacattaactattccaccagtttcttgtttgctagaaggcattcctcagtct |
114 |
Q |
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| T |
45101241 |
agatattgtccatgatcctttttgttggaatgcttatggagatttagagacattaactattccaccagtttcttgtttgctagaaggcattcctcagtct |
45101142 |
T |
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| Q |
115 |
ttgttagactatgatataggtcattgctgacccaaataggttctttataaatttaagcaaaagtgtgtccatgtatacatatgattgttaggtattgtta |
214 |
Q |
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| T |
45101141 |
ttgttagactatgatataggtcattgctgacccaaataggttctttataaatttaagcaaaagtgtgtccatgtatatatatgattgttaggtattgtta |
45101042 |
T |
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| Q |
215 |
aggaatatagcatttgattttgaatcttctgttgtgattgattaggagttgtgttttttatgctcctcctgaatgtaaactgtgttgcgtgaatgccaag |
314 |
Q |
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| T |
45101041 |
aggaatatagcatttgattttgaatcttctgttgtgattgattaggagttgtgttttttatgctcctcctgaatgtaaactgtgttgcgtgaatgccaag |
45100942 |
T |
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| Q |
315 |
gtttaaaaatgcacttgcttgtatcttcgagttt |
348 |
Q |
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| T |
45100941 |
gtttaaaaatgcacttgcttgtatcttcgagttt |
45100908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 26 - 147
Target Start/End: Original strand, 38662564 - 38662685
Alignment:
| Q |
26 |
atgatcctttttgttggaatgcttatggagatttggagacattaactattccaccagtttcttgtttgctagaaggcattcctcagtctttgttagacta |
125 |
Q |
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| T |
38662564 |
atgatcctttttgttggaatgcttatggaaattcagagacattaaccattcctccagtattttgcttgttggatggtattcctcagtctattccagccaa |
38662663 |
T |
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| Q |
126 |
tgatataggtcattgctgaccc |
147 |
Q |
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| T |
38662664 |
tgatattgatcattgctgaccc |
38662685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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