View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19842_high_13 (Length: 350)

Name: NF19842_high_13
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19842_high_13
NF19842_high_13
[»] chr4 (5 HSPs)
chr4 (18-176)||(20354701-20354859)
chr4 (244-341)||(20354927-20355024)
chr4 (18-55)||(26237432-26237469)
chr4 (19-56)||(45721151-45721188)
chr4 (305-341)||(23629115-23629151)
[»] chr7 (1 HSPs)
chr7 (20-56)||(20247179-20247215)
[»] chr5 (2 HSPs)
chr5 (22-56)||(36783307-36783341)
chr5 (22-56)||(40060348-40060382)
[»] chr3 (3 HSPs)
chr3 (22-56)||(25295023-25295057)
chr3 (22-56)||(50682528-50682562)
chr3 (19-56)||(5549350-5549387)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-56)||(410817-410850)
[»] scaffold0116 (1 HSPs)
scaffold0116 (22-66)||(17456-17500)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 6e-56; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 176
Target Start/End: Original strand, 20354701 - 20354859
Alignment:
Q  18 gagtcggattagtcgtccaccattgatgggttggaaacccatataaaagccnnnnnnnnnnnngttagtcaaatgaatattagttgtcgataaagtcatt 117  Q
    |||||||||||||||||||| ||||||| ||||||||||| ||||||||||            |||||||||||||||||||||||||||||||||||||    
T  20354701 gagtcggattagtcgtccactattgatgagttggaaacccgtataaaagccaaaaaaaaaaaagttagtcaaatgaatattagttgtcgataaagtcatt 20354800  T
Q  118 aaattataagtctaataacgccagaaaaatatacttttatgaaacaataatctttggac 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20354801 aaattataagtctaataacgccagaaaaatatacttttatgaaacaataatctttggac 20354859  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 244 - 341
Target Start/End: Original strand, 20354927 - 20355024
Alignment:
Q  244 gaaaagacttcattacatcctaaaattcacacccaaagaaaccgaaatcaaaaggaaaactcatgttataaaattaatctaaagtattacaagatatt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20354927 gaaaagacttcattacatcctaaaattcacacccaaagaaaccgaaatcaaaaggaaaactcatgttataaaattaatctaaagtattacaagatatt 20355024  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 26237469 - 26237432
Alignment:
Q  18 gagtcggattagtcgtccaccattgatgggttggaaac 55  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  26237469 gagtcggattagtagtccaccattgatgggtcggaaac 26237432  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 45721151 - 45721188
Alignment:
Q  19 agtcggattagtcgtccaccattgatgggttggaaacc 56  Q
    |||||||||||||||||||| || ||||||||||||||    
T  45721151 agtcggattagtcgtccacctttaatgggttggaaacc 45721188  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 23629151 - 23629115
Alignment:
Q  305 catgttataaaattaatctaaagtattacaagatatt 341  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  23629151 catgttataaaattagtctaaagtattgcaagatatt 23629115  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 20247215 - 20247179
Alignment:
Q  20 gtcggattagtcgtccaccattgatgggttggaaacc 56  Q
    ||||||||||||||||||||||||| |||||||||||    
T  20247215 gtcggattagtcgtccaccattgataggttggaaacc 20247179  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 36783307 - 36783341
Alignment:
Q  22 cggattagtcgtccaccattgatgggttggaaacc 56  Q
    ||||||||||||||||||||| |||||||||||||    
T  36783307 cggattagtcgtccaccattggtgggttggaaacc 36783341  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 40060348 - 40060382
Alignment:
Q  22 cggattagtcgtccaccattgatgggttggaaacc 56  Q
    ||||||| |||||||||||||||||||||||||||    
T  40060348 cggattaatcgtccaccattgatgggttggaaacc 40060382  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 25295023 - 25295057
Alignment:
Q  22 cggattagtcgtccaccattgatgggttggaaacc 56  Q
    ||||||||||||||||||||| |||||||||||||    
T  25295023 cggattagtcgtccaccattggtgggttggaaacc 25295057  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 50682528 - 50682562
Alignment:
Q  22 cggattagtcgtccaccattgatgggttggaaacc 56  Q
    ||||||||||||||||||||||| |||||||||||    
T  50682528 cggattagtcgtccaccattgataggttggaaacc 50682562  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 5549350 - 5549387
Alignment:
Q  19 agtcggattagtcgtccaccattgatgggttggaaacc 56  Q
    |||||||||||||||||||||||||||| || ||||||    
T  5549350 agtcggattagtcgtccaccattgatggattagaaacc 5549387  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 410817 - 410850
Alignment:
Q  23 ggattagtcgtccaccattgatgggttggaaacc 56  Q
    |||||||||||||||| |||||||||||||||||    
T  410817 ggattagtcgtccacctttgatgggttggaaacc 410850  T

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Target: scaffold0116 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 17456 - 17500
Alignment:
Q  22 cggattagtcgtccaccattgatgggttggaaacccatataaaag 66  Q
    ||||||||||| ||||||||||||||| ||||||| || ||||||    
T  17456 cggattagtcgcccaccattgatgggtcggaaaccgatgtaaaag 17500  T

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