View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_14 (Length: 345)
Name: NF19842_high_14
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 36865016 - 36865188
Alignment:
| Q |
20 |
gttgacaccactcaagtacattttgaagtcctgaagatctttaaccacttggagaagttcgttgtagatggcaacgtcagaataaattatctcaaagttg |
119 |
Q |
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| T |
36865016 |
gttgacaccactcaagtacattttgaagtcctgaagatctttaaccacttggagaagttcgttgtagatggcaacgtcagaataaattatctcaaagttg |
36865115 |
T |
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| Q |
120 |
tgactaaacaagacctttagtttttccaaatgctcaactaccttggaattacaagagtcttgactcttgagaa |
192 |
Q |
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| T |
36865116 |
tgactaaacaagacctttagtttttccaaatgctctactaccttggaattacaagagtcttgactcttgagaa |
36865188 |
T |
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Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 191 - 330
Target Start/End: Original strand, 36865221 - 36865364
Alignment:
| Q |
191 |
aatatcataatttgtaatttgatctcctttgggagaaaaatccaaatgtttctctatggttctctcttgagatg----catcaacattgagacgttcatc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36865221 |
aatatcataatttgtaatttgatctcctttgggagaaaaatccaaatgtttctctatggttctctcttgagatgtatatatcaacattgagacgttcatc |
36865320 |
T |
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| Q |
287 |
agcagtaatctccaaaataggttggatatacgtggcatcctttg |
330 |
Q |
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| T |
36865321 |
agcagtaatctccaaaataggttggatatacgtggcatcctttg |
36865364 |
T |
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