View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_18 (Length: 326)
Name: NF19842_high_18
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 10068207 - 10068514
Alignment:
| Q |
14 |
aaaatacctagtgagtggtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaaggttattaaaaaattttaatctaggcattagtt |
113 |
Q |
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| T |
10068207 |
aaaatacctagtgagtagtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaaggttattaaaaaactttaatctaggcattagtt |
10068306 |
T |
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| Q |
114 |
aacttcatatataattaatcagacaaagttcgtttgtgtaagtaactggaaaaaggaatttgtctatgattgattcagtctgtgggatttgttaatttaa |
213 |
Q |
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| T |
10068307 |
aacttcaaatataattaatcagacaaagttcatttgtgtaagtaactggaaaaaagaatttgtctatgattgatacagtctatgggatttgttaatttaa |
10068406 |
T |
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| Q |
214 |
atgtcaaccttgatgattaagataaaattcatattaagtgaaatacatggaaggtgtgtctcttccaattagtttaacatgtccaatatcactttaattt |
313 |
Q |
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| T |
10068407 |
atgtcaaccttgatgattaagataaaattcatattaagtgaaatacatggaag--gtgtctcttccaattagtttaacctgtccaatatcactttaattt |
10068504 |
T |
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| Q |
314 |
aattgattga |
323 |
Q |
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| T |
10068505 |
aattgattga |
10068514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 10062819 - 10062943
Alignment:
| Q |
137 |
caaagttcgtttgtgtaagtaactggaaaaaggaatttgtctatgattgattcagtctgtgggatttgttaatttaaatgtcaaccttgatgattaagat |
236 |
Q |
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| T |
10062819 |
caaagttcgtctatgcaagtaattggaaaaagtattttgtccatgattgatttagtccgtgggatttgttgatttaaatgtcaaccttaatgattaagat |
10062918 |
T |
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| Q |
237 |
aaaattcatattaagtgaaatacat |
261 |
Q |
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| T |
10062919 |
aaaattcatattgagtgaaatacat |
10062943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 10062395 - 10062450
Alignment:
| Q |
27 |
agtggtggaataggccaaaaaattgactatgtcgtggaaagaaactttcatcaagg |
82 |
Q |
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|||| |||| |||||| |||| ||||| |||||||| ||||||||||||||||||| |
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| T |
10062395 |
agtgatggactaggcctaaaagttgaccatgtcgtgaaaagaaactttcatcaagg |
10062450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 8358152 - 8358073
Alignment:
| Q |
236 |
taaaattcatattaagtgaaatacatggaaggtgtgtctcttccaattagtttaacatgtccaatatcactttaatttaatt |
317 |
Q |
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| T |
8358152 |
taaaattcatattatgtgaaatacatggaaggtgt--ctcttcctattagtttaacctgcccattatcactttaatttaatt |
8358073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 317
Target Start/End: Original strand, 39293492 - 39293571
Alignment:
| Q |
236 |
taaaattcatattaagtgaaatacatggaaggtgtgtctcttccaattagtttaacatgtccaatatcactttaatttaatt |
317 |
Q |
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|||||||||||||| |||||| || |||||||||| ||||||| ||| ||||||| || ||| |||||||||||||||||| |
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| T |
39293492 |
taaaattcatattatgtgaaacacgtggaaggtgt--ctcttccgattggtttaacctgcccattatcactttaatttaatt |
39293571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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