View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_20 (Length: 314)
Name: NF19842_high_20
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 6117520 - 6117232
Alignment:
| Q |
16 |
aatatatgatgaagagagaagaaattatggatgcttatttttaatgttattgttgttaggatcatcatttgaagtggagagaggggagaattttgtgctg |
115 |
Q |
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| T |
6117520 |
aatatatgatgaagagagaagaaattatggatgcttatttttaatgttattgttgttaggatcatcatttgaagaggagagaggggagaattttgtgctg |
6117421 |
T |
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| Q |
116 |
atgtgtggtatttgaacttgaattgtttcttcaccaaagcagtttgagaaaaatggctttcgatccgttggtttggtattgtcagccggttgaaaatgga |
215 |
Q |
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| T |
6117420 |
atgtgtggtatttgaacttgaattgtttcttcaccaaagcagtttgagaaaaatggctttcgatccgttggtttggtattgtcagccggttgaaaatgga |
6117321 |
T |
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| Q |
216 |
gtgtggacaagaacagttcagaatgcttttggtgcttacactccttgtgcggtcgactctttggtgattggtatttctcatttgatgat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6117320 |
gtgtggacaagaacagttcagaatgcttttggtgcttacactccttgtgcggtcgactctttggtgattggtatttctcatttggtgat |
6117232 |
T |
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