View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_21 (Length: 295)
Name: NF19842_high_21
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_21 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 38568397 - 38568103
Alignment:
| Q |
1 |
agtacgtcaatactagtagtaatttgaaaaatagaataattgaatgtaatcgcatattagtgtcgtttggacaccggacacaaatttaatgtgaagtgtc |
100 |
Q |
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| T |
38568397 |
agtacgtcaatactagtagtaatttgaaaaatagaataattgaatgtaatcgcatattagtgtcgtttggacaccggacacaaatttaatgtgaagtgtc |
38568298 |
T |
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| Q |
101 |
tactacatagctttgaatttatttttctgaatgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttgg |
200 |
Q |
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| T |
38568297 |
tactacatagctttgaatttatttttctgaatgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttgg |
38568198 |
T |
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| Q |
201 |
cggttttgtgatagcatttagcagaggatggcttcttactgttgtattgatgtcaacacttccacttcttgttgtgtcgggtgctgccatggctg |
295 |
Q |
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| T |
38568197 |
cggttttgtgatagcatttaccagaggatggcttcttactgttgtattgatgtcaacacttccacttcttgttgtgtcgggtgctgccatggctg |
38568103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 38527125 - 38526962
Alignment:
| Q |
132 |
tgaaggtttcattttatgtttgaaaaaacaggttgggaaatttctgcagctaatagcaacatttgttggcggttttgtgatagcatttagcagaggatgg |
231 |
Q |
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||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| | ||| ||| |
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| T |
38527125 |
tgaaggtttaattttgtgtttgaaaaaacaggttgggaagtttctgcagctaatagcaacatttattgggggttttgtgatagcatttacaaaagggtgg |
38527026 |
T |
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| Q |
232 |
cttcttactgttgtattgatgtcaacacttccacttcttgttgtgtcgggtgctgccatggctg |
295 |
Q |
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| T |
38527025 |
cttcttactgttgttatgatgtcaacacttccatttcttgttgtgtcaggtgctgccatggctg |
38526962 |
T |
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