View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19842_high_22 (Length: 292)
Name: NF19842_high_22
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_22 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 18359853 - 18359730
Alignment:
| Q |
32 |
agtgttgcagaatgataatgtgctttgaaatattattggggctaatgcaatggttcgtattaatgataaggatgtgatttgtttgggatttga-tttgca |
130 |
Q |
| |
|
|||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |||||| |
|
|
| T |
18359853 |
agtgttgcagaatgggaatgtgttttggaatattattggggctaatgcaatggttcgtattaacgataaggttttgatttgtttgggatttgattttgca |
18359754 |
T |
|
| Q |
131 |
aaagcatttcaagttgattttacc |
154 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18359753 |
aaagcatttcaagttgattttacc |
18359730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 18359206 - 18359116
Alignment:
| Q |
167 |
caactatccaccaattagaactagaattgtcaaacaagctccaagctcttcagcctcttaattatagtcctctattgaaaaaactattttc |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
18359206 |
caactatccatcaattagaactagaattgtcaaataagctccaaactcttgagcctcttaattatagtcctctattgaaaaaacttttttc |
18359116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 33777587 - 33777482
Alignment:
| Q |
18 |
ccttccattgatgtagtgttgcagaatgataatgtgctttgaaatattattggggctaatgcaatggttcgtattaatgataaggatgtgatttgtttgg |
117 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777587 |
ccttccattgatctagtgttgcagaatgagaatgtggtttggaatattattggagctaatgcaatggttcgtattaatgataaggatgtgatttgtttgg |
33777488 |
T |
|
| Q |
118 |
gatttg |
123 |
Q |
| |
|
| |||| |
|
|
| T |
33777487 |
gttttg |
33777482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 10752192 - 10752259
Alignment:
| Q |
180 |
attagaactagaattgtcaaacaagctccaagctcttcagcctcttaattatagtcctctattgaaaa |
247 |
Q |
| |
|
|||||| |||||||||||||| ||||||||| ||||| ||| ||||||| |||| |||| | |||||| |
|
|
| T |
10752192 |
attagagctagaattgtcaaataagctccaaactcttaagcatcttaatcatagacctcaactgaaaa |
10752259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 167 - 257
Target Start/End: Complemental strand, 2992821 - 2992731
Alignment:
| Q |
167 |
caactatccaccaattagaactagaattgtcaaacaagctccaagctcttcagcctcttaattatagtcctctattgaaaaaactattttc |
257 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2992821 |
caactatccagcaattagaactagaattgtcaaataagctccaaactcttgagcctcttaattatagtcctctattgaaaaaacttttttc |
2992731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University