View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19842_high_23 (Length: 270)
Name: NF19842_high_23
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 39811790 - 39811538
Alignment:
| Q |
1 |
ttaatagagttgttatgttcttctttggatctggccttgataaggctaatatcataggcttgtgaggatttgtgaagaaacgcatcacctgcataatgtt |
100 |
Q |
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| T |
39811790 |
ttaatagagttgttatgttcttctttggatctggccttgataaggctaatatcataggcttgtgaggatttgtgaagaaacgcatcacctgcataatgtt |
39811691 |
T |
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| Q |
101 |
attagtttcaagttaataacagtactaactaaggtgtaataagagcaaatataagtaatgcctccaaactttgtactattagtatttcagnnnnnnnaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39811690 |
attagtttcaagttaataacagtactaactaaggtgtaataagagcaaatataagtaatgcctccaaactttgtactattagtatttcagtttttttaat |
39811591 |
T |
|
| Q |
201 |
atatttggttattgcgtgacatagtaattctttggttatcggctacaacgagc |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39811590 |
atatttggttattgcgtgacatagtaattctttggttatcggctacaacgagc |
39811538 |
T |
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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 15799194 - 15799110
Alignment:
| Q |
12 |
gttatgttcttctttggatctggccttgataaggctaatatcataggcttgtgaggatttgtgaagaaacgcatcacctgcataa |
96 |
Q |
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|||| |||||||||||||||||||||||||||||| || |||| ||| |||||||||||||| |||||||||||||||||||||| |
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| T |
15799194 |
gttaagttcttctttggatctggccttgataaggccaagatcacaggtttgtgaggatttgtaaagaaacgcatcacctgcataa |
15799110 |
T |
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