View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19842_high_24 (Length: 268)

Name: NF19842_high_24
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19842_high_24
NF19842_high_24
[»] chr3 (3 HSPs)
chr3 (64-165)||(37418030-37418125)
chr3 (188-268)||(37418123-37418195)
chr3 (37-80)||(53058736-53058780)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 37418030 - 37418125
Alignment:
Q  64 cctaccattgaatcctttcatctgggtttattcaaaatcaaaatcaaaaggggattagggtttgcagagaaagggattagtcttgttcaaccaaccaccg 163  Q
    |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37418030 cctaccattgaatcctttcatctgggtttattcaa------aatcaaaaggggattagggtttgcagagaaagggattagtcttgttcaaccaaccaccg 37418123  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 37418123 - 37418195
Alignment:
Q  188 gatccaaaattcaacaaaggtccaaactctgtctgtctcccagagagagttcgagttcaaaggcaatcatatcatcagatc 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||    
T  37418123 gatccaaaattcaacaaaggtccaaactctgtctgtctcccaga--------gagttcaaaggcaatcatatcatcagatc 37418195  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 53058736 - 53058780
Alignment:
Q  37 aggtttgtttcagaattagcagtttgtccta-ccattgaatcctt 80  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||    
T  53058736 aggtttgtttcagaattagcagtttgtcctagccattgactcctt 53058780  T

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