View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19842_high_25 (Length: 253)
Name: NF19842_high_25
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 24106411 - 24106205
Alignment:
| Q |
1 |
gagatttctcaaagtatcttgttgatggatactgcatcagagatctgtgcagagcttaaacaaggtgatattttcgatacagtgaagcaagttgattgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24106411 |
gagatttctcaaagtatcttgttgatggatactgcatcagagatctgtgaagagcttaaacaaggtgatattttcgatacagtgaagcaagttgattgct |
24106312 |
T |
|
| Q |
101 |
ccatttccatttattactgtactatattgaattagaatataaaaccaagcaacattaggacagttttaaggtcatatatattggcttaaacacaataaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24106311 |
ccatttccatttattactgtactatattgaattagagtataaaaccaagcaacattaggacagttttaaggtcatatatattggcttaaacacaataaag |
24106212 |
T |
|
| Q |
201 |
aggaaaa |
207 |
Q |
| |
|
|||||| |
|
|
| T |
24106211 |
gggaaaa |
24106205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 24113757 - 24113551
Alignment:
| Q |
1 |
gagatttctcaaagtatcttgttgatggatactgcatcagagatctgtgcagagcttaaacaaggtgatattttcgatacagtgaagcaagttgattgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24113757 |
gagatttctcaaagtatcttgttgatggatactgcatcagagatctgtgaagagcttaaacaaggtgatattttcgatacagtgaagcaagttgattgct |
24113658 |
T |
|
| Q |
101 |
ccatttccatttattactgtactatattgaattagaatataaaaccaagcaacattaggacagttttaaggtcatatatattggcttaaacacaataaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24113657 |
ccatttccatttattactgtactatattgaattagagtataaaaccaagcaacattaggacagttttaaggtcatatatattggcttaaacacaataaag |
24113558 |
T |
|
| Q |
201 |
aggaaaa |
207 |
Q |
| |
|
|||||| |
|
|
| T |
24113557 |
gggaaaa |
24113551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 24617386 - 24617514
Alignment:
| Q |
79 |
acagtgaagcaagttgattgctccatttccatttattactgtactatattgaattagaatataaaaccaagcaacattaggacagttttaaggtcatata |
178 |
Q |
| |
|
||||||||||||||||||||||| ||||||| || |||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24617386 |
acagtgaagcaagttgattgctctatttccactttttactgcactgtattgaattagagtataaaaccaagcaacattaggacagttttaaggtcatata |
24617485 |
T |
|
| Q |
179 |
tattggcttaaacacaataaagaggaaaa |
207 |
Q |
| |
|
|||||||||||||||||| ||| |||||| |
|
|
| T |
24617486 |
tattggcttaaacacaattaaggggaaaa |
24617514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 24101984 - 24101934
Alignment:
| Q |
115 |
tactgtactatattgaattagaatataaaaccaagcaacattaggacagtt |
165 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
24101984 |
tactgtactatagtgaattagagtatgaaaccaagcaacattaggacagtt |
24101934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University