View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19842_high_26 (Length: 251)
Name: NF19842_high_26
Description: NF19842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19842_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5983188 - 5982951
Alignment:
| Q |
1 |
tatgttcaagtgcttctctgcaaagtgtgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggcatcgacggatttcaagaccttgtta |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5983188 |
tatgttcaagtgcttctctgcaaagtgcgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggcatcgacagatttcaagaccttgtta |
5983089 |
T |
|
| Q |
101 |
ctcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcgaccatcaccatttgtgtcgaatgatgtcttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5983088 |
ctcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcgaccgtcaccatttgtgtcgaatgatgtcttta |
5982989 |
T |
|
| Q |
201 |
accattgtttgaactgttgcaaagtaatcacacgcttc |
238 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5982988 |
accattgtttgaactgttgcaaagtcatcacacgcttc |
5982951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5979416 - 5979179
Alignment:
| Q |
1 |
tatgttcaagtgcttctctgcaaagtgtgcaaggttaatgaactctttatcatcaatgaaaccgtcgtggttggcatcgacggatttcaagaccttgtta |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| || |||||||||||||||||||| || ||||| | ||| ||||| ||||||||||| || |
|
|
| T |
5979416 |
tatgttcaagtgcttctctgcaaatcgtgcaagattaataaattctttatcatcaatgaaaccatcatggtttgaatcaacggacttcaagaccttattg |
5979317 |
T |
|
| Q |
101 |
ctcttccacgaagcaaagaggccaccggtgattctcaacacctcgcgcagctcatctttgctgattcgaccatcaccatttgtgtcgaatgatgtcttta |
200 |
Q |
| |
|
|||||||| |||||||| ||||||| ||||||||||| |||| ||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
5979316 |
ctcttccatgaagcaaaaaggccactggtgattctcattgcctcacgcagttcacctttgctgatgcgaccgtcaccatttgtgtcgaatgatgtcttta |
5979217 |
T |
|
| Q |
201 |
accattgtttgaactgttgcaaagtaatcacacgcttc |
238 |
Q |
| |
|
||||||| ||||||||||||| ||| |||||||||||| |
|
|
| T |
5979216 |
accattgcttgaactgttgcagagtcatcacacgcttc |
5979179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University